ISHma8
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006396 | ND | Haloarcula marismortui | Haloarcula marismortui chromosome I |
DNA section
IS Length : 937 bp
Ends
IR Length : 16/21
IRL : GGCTCTGGTGAATCGCGGGACAGCGTCGGTTTCGACCGTCAGAACTAGGA
IRR : GGCCGTAGTGAATCGCCAGACGTAGCTTTATTTCACGGTTTCAGAGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTAAAACA | GTCAAATA | ATACCCCGTC | 8 |
DNA sequence
GGCTCTGGTGAATCGCGGGACAGCGTCGGTTTCGACCGTCAGAACTAGGAAGATGAAGCGGGAAACCGTCGATGTCAATGTCGAAAATTTCCCGCTTCAC
AAGCAAAGTCGTTCAGTTAGCTAAAAATGCTGTTGGTGAGCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGAGTATGCGGTGGTGTCG
CTACACTGTCTACGGGTTTACCTGAAAAAATCTTACCGAGAAGCACTTGATTTGCTGAACGAGATGCCACAAATACTCGGGGAGATCGGCCGCGTCAAGG
CCGATCTCCCCGACCACTCGACACTGGTCAAGTGGTTTGACAGAATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGGCCC
AAGCGGCCATGCCGCTATCGACGCGACGTTTTTCGACCGAGAAAACGCTAGCAAGCACTACTGTCGCCGGACGAATTACCGTGTTCAAACGCTCAAAGCA
ACTGCTCTCGTCGACACAGAAAGCCGGGCTATTCTGGATGTTCACTGTACGACTGAGAAACGCCACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGCA
ACGCGGGCGACCTCGCCAGCCTCGCTGCCGACAAAGGCTACGATTGGATGGATTTACGCGAGAAACTCCGAGAAGAAGGCGTGAGACCACTAATTAAACA
TCGTGAGTTCCGGCCCATCGATCACGCGCATAACGCGCGGATCGATGGGCCTCGATACCGTCAGCGAGCAATGTGTGAGACCGTTTTCTCGACGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGAACTTGGTACGGTGAATTTCGTGAACTCGTCCTGATGTGTACGGTTCACAACATCAAGCAGTCTCTGAAAC
CGTGAAATAAAGCTACGTCTGGCGATTCACTACGGCC
AAGCAAAGTCGTTCAGTTAGCTAAAAATGCTGTTGGTGAGCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGAGTATGCGGTGGTGTCG
CTACACTGTCTACGGGTTTACCTGAAAAAATCTTACCGAGAAGCACTTGATTTGCTGAACGAGATGCCACAAATACTCGGGGAGATCGGCCGCGTCAAGG
CCGATCTCCCCGACCACTCGACACTGGTCAAGTGGTTTGACAGAATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGGCCC
AAGCGGCCATGCCGCTATCGACGCGACGTTTTTCGACCGAGAAAACGCTAGCAAGCACTACTGTCGCCGGACGAATTACCGTGTTCAAACGCTCAAAGCA
ACTGCTCTCGTCGACACAGAAAGCCGGGCTATTCTGGATGTTCACTGTACGACTGAGAAACGCCACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGCA
ACGCGGGCGACCTCGCCAGCCTCGCTGCCGACAAAGGCTACGATTGGATGGATTTACGCGAGAAACTCCGAGAAGAAGGCGTGAGACCACTAATTAAACA
TCGTGAGTTCCGGCCCATCGATCACGCGCATAACGCGCGGATCGATGGGCCTCGATACCGTCAGCGAGCAATGTGTGAGACCGTTTTCTCGACGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGAACTTGGTACGGTGAATTTCGTGAACTCGTCCTGATGTGTACGGTTCACAACATCAAGCAGTCTCTGAAAC
CGTGAAATAAAGCTACGTCTGGCGATTCACTACGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
834 bp | 277 aa | 72 | 905 | + | No |
Chemistry : DDE
ORF sequence :
MSMSKISRFTSKVVQLAKNAVGERGEVAAPEGGGGFAEYAVVSLHCLRVYLKKSYREALDLLNEMPQILGEIGRVKADLPDHSTLVKWFDRIKTALWRVL
LRLSAQLHGPSGHAAIDATFFDRENASKHYCRRTNYRVQTLKATALVDTESRAILDVHCTTEKRHDTQLGWQVARRNAGDLASLAADKGYDWMDLREKLR
EEGVRPLIKHREFRPIDHAHNARIDGPRYRQRAMCETVFSTIKRTLGDAVRARTWYGEFRELVLMCTVHNIKQSLKP
LRLSAQLHGPSGHAAIDATFFDRENASKHYCRRTNYRVQTLKATALVDTESRAILDVHCTTEKRHDTQLGWQVARRNAGDLASLAADKGYDWMDLREKLR
EEGVRPLIKHREFRPIDHAHNARIDGPRYRQRAMCETVFSTIKRTLGDAVRARTWYGEFRELVLMCTVHNIKQSLKP
Blast result :
Comments
ISHma8 is 92% aa similar to ISH9.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234