ISHma7

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006396 ND Haloarcula marismortui
Haloarcula marismortui chromosome I
DNA section
IS Length : 2008 bp

Ends


Left end : AGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTAAGCCCCGTTAAACGTGTTCCGTTCGCTCGATATACTGCTCAATCGTGT II struct. : Yes
Right end : GTGACCCAACCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAAACCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGAAATCAACAGACAGACCTCTACCTCGTGCTTGAGGGCGACtcac

DNA sequence

AGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTAAGCCCCGTTAAACGTGTTCCGTTCGCTCGATATACTGCTCAATCGTGT
CGGTCGAAACATCACCCGCCGTCCCCACGTAGTACGATTCCTCCCAGAACCCACCTCCCCACAGATACTCCTCCAAGTACGACTCGTACTGTTCCCACAT
CTCCCGCGCCGTGATGCTCTTGACCGTTCGCACAATCTCGCTCGGCGCATGCTTCGGGTGGGCTGACAGGAACAGGTGTACGTGGTCGGGTGAGATGTGG
AGCGACAGTATCTCGTAGCCGTACTCGTCGCACATGGCACGGAAACTCGCTTCCAGCGAATCCTCGATTGGTTCGAGAATGGTGTGGCGGTACTTCGGAC
ACCACACGAAGTGGTAGTTAATGTTGTACACCGTGTGGTTCGACCGCTTCTCGCCCATACATACCAATACAACGACCAATCGAAAGTATTCTCTGAAGTG
ACTCACAGACTACCACAAGTGAACTTTTAACTGTGGAAGAACAAGGGGTAGACGTGACGAAACAACTCAAGGTATCCGACACCGTGTACGACGACCTTGA
CGAACTCAAGGACGAGGAGGGCCACACGAGTTTCGACAGCGTACTCCGCACGCTCCTCCTCCACTACCGTCACGTCCAACCCAACGAGCAGGAATGACCG
ACTCACAGGCACTCGTCAAGACGCTGGACTTCCAACTCGACATCCAGAGTGACAACGAGAGCCTGCTGTACGACGCCACCCTCGAAGCGCGGTCGGTGTA
CAACGAAACCATCCGTCTCGCCAAGCAAGGCGTCGACTGGGACGCGATTCCCGACCGTGTAGCCGACGACGCCAACCTCGTGAAAAACACGACACAGCGC
GTCGTCGCCAAAGCACTCGGCGCGATGGAGAACTACTACGAGTACGACGACTTCGGCAAACCCAGTCACACCAAGGACGGCGCGTACCCCCTCCGAGCGA
ACTACGAGGAGGGGTACAACCTGTCGCTCACCGACGACGGCGACGTGGCGTTCCGCATCAGCGCGAAGCCGTACAAGCACGTCACGGGCGTCCTCAAAGG
GAGTGACGCCAACCTCGACATTCTCCAGACCGCACTCGAAAGCGATGAGTGGAAGATTGGGACGGCGGAAGCCCTGTTCCACAACGACAACGCTGAGTTG
CACGTCAACGTCACCAACACCGAACAGACCGTTCGAGACAAGCAGGACTCGCGGACGGTCGTCGGTGTGGACGTGAACGAAGACAACGTGGCTCTCACCG
CTCTCTCCGAGGATGGCATTGAGGACTCGTTGGTTATTGACTTCCCCGAAATCAAGTTCGAGCGCCACCGCTACTTCACGATGCGGAAGCGCGTCCAGAA
CGCGGGGAAAGACAGCATCCACGACACGCTGGAAGGGCGTGAGGAACGGTTCGTCCGTGACCGACTCCACAAGGTGTCTCGACACATCGTGGAGTGGAGT
CGTCAGTTCGAGAAGCCGTGCATCGTCTTTGAAGACCTCAAAGAGATGCGCGACAGTATCGACTACGGCACGCGGATGAACCGACGCTTGCACCACCTTC
CGTTCCGCGCCCTCCAGTTCTATACGTCGTACAAGGCGTCGTTCGAGGGTATCCCGACTGCGTGGATTAACCCCGAGTACACGAGCCAACGGTGTCCGAT
GTGCGGACACACGGAACGTGCGAACCGTAACAAGAAACGGTTCAATTGTTGGGACTGTGGGCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAACATC
GCCGTGAAAGGCGTGAAGAAACTCGATTGGAATGTGCCTGCTCTCAACAGCCTTCCCGTTGTTCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACG
CCCCGACCGTGACCCAACCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAAACCACGGGAAGCCTCGGGGCTTGACCCCGAGG
CGGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
399 bp132 aa60458-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MGEKRSNHTVYNINYHFVWCPKYRHTILEPIEDSLEASFRAMCDEYGYEILSLHISPDHVHLFLSAHPKHAPSEIVRTVKSITAREMWEQYESYLEEYLW
GGGFWEESYYVGTAGDVSTDTIEQYIERTEHV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1275 bp424 aa6941968+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTDSQALVKTLDFQLDIQSDNESLLYDATLEARSVYNETIRLAKQGVDWDAIPDRVADDANLVKNTTQRVVAKALGAMENYYEYDDFGKPSHTKDGAYPL
RANYEEGYNLSLTDDGDVAFRISAKPYKHVTGVLKGSDANLDILQTALESDEWKIGTAEALFHNDNAELHVNVTNTEQTVRDKQDSRTVVGVDVNEDNVA
LTALSEDGIEDSLVIDFPEIKFERHRYFTMRKRVQNAGKDSIHDTLEGREERFVRDRLHKVSRHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFYTSYKASFEGIPTAWINPEYTSQRCPMCGHTERANRNKKRFNCWDCGHQDHSDRGASVNIAVKGVKKLDWNVPALNSLPVVRKVRRRASGA
VDAPTVTQPTVRGYQADGRMGVSD

 

Blast result :
Comments
ISHma7 is 58%(ORF A) aa similar to ISDra2 and 47% (ORF B) to ISH12.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234