ISMba18

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 622 bp

Ends


Left end : TTCATTCGAATACCCCGCTAGCTTGCTGCGGGGATGGAAAACTTCCCCGAGAACCGTTGTTAAATAACTACCTTATATTTTTAGCTACATTTGTACTGTA II struct. : Yes
Right end : AACAAATGAAAATAATCGATTTTCAATAAGCCAATACAACCGAGCGGTGGCGCGAACATACCCCGTTGCTTGCAGCGGGGTGCGCCAGCGCAACTTTGAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAAAGATAAAATGGATTATAGTTTCAGATTTTTTGGACTtgat
GGATAGGCTCGATCTTTATTTTTGAGCATTATTTTTGAGtgat
ATATATTTTTTTTATTTATTGCGAAATTTAAAATCAGGTtgat
AAAATTTTTTTGATTTGATTTTCAAGCATGAGGGCCTCAtgat

DNA sequence

TTCATTCGAATACCCCGCTAGCTTGCTGCGGGGATGGAAAACTTCCCCGAGAACCGTTGTTAAATAACTACCTTATATTTTTAGCTACATTTGTACTGTA
AATGGAACTCAGACATGCAAACCATTGTGTCTATAAAATAAGATACCACATGGTTTTTTGTATGAAATATCGGAAAAAGCTTCTTTTAGATGCTGAAATC
ATTCGTTTTTTGAAAACCATATGCTTTGGAATTGGTGAAAGGTACTGTTTTGAGTTTGATGCAATTGGTACTGATGGTGATCATGTCCATCTTTTTGTTG
GTGCCGAACCAAAATATTCTCCTTCAAGAGTAATGCAAATAATAAAAAGCATTACAGCAAGACAAATTTTTAAGCAATACCCTGAGATCAAAAAACAGCT
TTGGGGTAGTGAACTGTGGAGTGATGGAGGATACATCGGAACCGTAGGAGATGGAACAACTTCCGATGTAATAAAAAGCTATATTGAAAATCAGGGAAAT
CAGGAAGAAAAAGAAGCATACAAACAAATGAAAATAATCGATTTTCAATAAGCCAATACAACCGAGCGGTGGCGCGAACATACCCCGTTGCTTGCAGCGG
GGTGCGCCAGCGCAACTTTGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
450 bp149 aa102551+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MELRHANHCVYKIRYHMVFCMKYRKKLLLDAEIIRFLKTICFGIGERYCFEFDAIGTDGDHVHLFVGAEPKYSPSRVMQIIKSITARQIFKQYPEIKKQL
WGSELWSDGGYIGTVGDGTTSDVIKSYIENQGNQEEKEAYKQMKIIDFQ

 

Blast result :
Comments
ISMba18 is 54% aa similar to ISMba16.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank