ISMba15

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
Methanosarcina barkeri Wiesmoor
DNA section
IS Length : 1251 bp

Ends


IR Length : 11/16

IRL : GGGTCCTCTTAAACTCACTCTCAAACTAGAGGTTATTACTTATTTGTTCC
IRR : GTCCCCTCTTAATTTCTTCATTCAGAGAAGGCTTGCAATTCCTTCCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
AGCTCGTTCATTTTTTAATATATTTTTTAAATATAAAAAA0
TATTCTTATTAAAATAAATATATAAAATAAATTAAAAATT0
CAAGGGGTCTATAATAGATATAATAATAGAATAAAAATGG0
AACTGGTACTTCTATTTTTATATAAAAATTACTAATTTAA0
CAGCTTTGCTTTTCATTATATATTTTCATTACAGAAGACC0
GATAACTAGTATTAATATTATATATTAATATGCAAAATAT0
TGCACATCGTTTTAGTATTATATTTATCACATATGTACTG0

DNA sequence

GGGTCCTCTTAAACTCACTCTCAAACTAGAGGTTATTACTTATTTGTTCCATTAATTAAGGTTATTAGTAGTTCCCCTCAAAAAAGTACATTCAATTTTT
CGTCTGAATTTTAATTAATGTCATAAAAAATCGTAAATTTTATTGAGAAGGATTTTCAATCCTTCTCTGGTGATTATTACGAAACCTCCACTTATACCAC
TAAATGAAGATTTCAAATGGCAATTGTTGTCCGAAATATTAAATGTTTTTGATTTGAGATTCTGTAAGCAAACTCTTACAAGGAGGGGCATTGTGCCCCT
CCACAGATCAGTACCTACTATAAAAATTGTTCTTCTAAGCATGTTTTTTTCTTGTGAAATCTCTTATTCTATAAAGGAATTAAAAGAAAGAGAAATCTTG
AGAAACTTTTTAAAAATCAGTTTAGTACCAACTGAAAAGGAAGTTTATGGCATTCTTAGTAAGTATGAACCCCAAGAGTTTACTGCTTTTGTTTTTGAAA
TATTGAATGATTTATGCCCTAAGAGAAAAAATGGATCAAGAGACATTATTATTGATAGTACTGACATAAACCTTAACCTGAACTGGCACGCTAAAAAGAT
TACCAAAGAAAGCCTAAAAAACAAAGAATACAAGTGGGGCCATTCAACCCATAGAGGTTTCTTCATTGGTATGAAACTTACTCTTGCACTTGATTCTCAA
ACATTAAAACCTTTAGCGTTTCTGATTAATGAAGCAAATGTAGCAGAATCTAAAATTTATCCTGAAATACTTAAAGAACTTAAAAGAAAGAGAATAATAA
AAGCAGGTGACGTTATCTATGCTGATAGAGGATACTATTCCTATGAAAACTACGTTATATCTGTAAGAAATTTTAAGGTAGTACCTTTAATTTTTCCAAG
GAAAAACTGTAATTTTAAGAAACTTTTCAATATGTTTAGATATCCTCTGAAAATATTTGATTTAAGAAGAAATACTGAAAAAGAAATTAAATTCTACAAA
GAAATAATTGCAAAGTTTAAAGAGTTAATAAGCAAATGGAAAGAACTCAGATCTGTAAGGTCAATTATAGAAGATGTATTCAAAATAGCGAAGAAAGCAT
ACTCTATGGAGAATTTACACAGATATACAAGGAGTTCTGTCCAAAAATACTGTTCTTTAGCTGTACTTTTAGTAGGGGTAACTGTAAATTACGGTATTAA
TGAAAGGAAGGAATTGCAAGCCTTCTCTGAATGAAGAAATTAAGAGGGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1065 bp354 aa1701234+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIITKPPLIPLNEDFKWQLLSEILNVFDLRFCKQTLTRRGIVPLHRSVPTIKIVLLSMFFSCEISYSIKELKEREILRNFLKISLVPTEKEVYGILSKYE
PQEFTAFVFEILNDLCPKRKNGSRDIIIDSTDINLNLNWHAKKITKESLKNKEYKWGHSTHRGFFIGMKLTLALDSQTLKPLAFLINEANVAESKIYPEI
LKELKRKRIIKAGDVIYADRGYYSYENYVISVRNFKVVPLIFPRKNCNFKKLFNMFRYPLKIFDLRRNTEKEIKFYKEIIAKFKELISKWKELRSVRSII
EDVFKIAKKAYSMENLHRYTRSSVQKYCSLAVLLVGVTVNYGINERKELQAFSE

 

Blast result :
Comments
ISMba15 is 44% aa similar to ISVa2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank