ISMma20

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 1593 bp

Ends


IR Length : 13/16

IRL : CCTGACTTTGACAGTAATATAAAAATAAGTGCTCTTTGTTTTGTGTTGTT
IRR : CCTAAGTTTGACAGCATCCACTAATTGATACTTTATTTTTCCCTTCTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTCTTTCAGCTTCATATTTTCATCAGGCTTTCCTGTCCATTCA6

DNA sequence

CCTGACTTTGACAGTAATATAAAAATAAGTGCTCTTTGTTTTGTGTTGTTTGGTAAAATGAACATCACAAAACATAGAGCCTTCCCTACAATTCCTAACA
AGAATATATGTGTTCCTATCGGACCGATTCTTGCCGTCCAACTCTTTTATGAAAAGCTTAATTTCTGTGACATTTTTAGCAAGCATAAAAGCAAAGGTCT
TGACCTCAATAGTTTAATAATCGGTTTGTTAAGCTATAAATTAACTGAGAATTTCAGTATCAAAGAAGCTGGCAAATGGTTAAATCAGAAAGAGATTCTC
GATATCTTAAATCTTGAACAGTTTCATGAAAGAGTTCTTTACAGAACTCTTGAACTTTTAGGACGTAACAGAGAGGAAATTCTCTCTGATATTCTGGATT
CTCTGTTTTCTGTATACGATTTTGAAGAGACAGATATAAACCTGGATTGGACGAGTATAGTTCTTTTCGGAACTAAATCCAAACTTGGTAAATACGGGTA
TAGCAGAGATTACAGACCTGATAAGCTACAGATAACCGTTGGAATTAGTGAATTAGCTAATCCCATTAACATTCCTATTGGAGTTACAGTGAATAGAGGA
AACGTTCTTGATCTGGAGCATTTCTCTGACACATATAACCAGGTAAAAAGTAAACTTAAAAAAGGTTCTCTTATTATTTTTGATAAAGGAGCTAATACCA
CTGATAATCTCAAGAGTATACAGGATGCTGAGATGGAATATCTCACTGCCATGAAACTGAATACAAGTGACGATAAAATAATAGAGAACTTTTATCTGGA
AAAAGCAGAACTAATAGATTCCGAAAAAGGTATATATGGGATAAAAATCGTCAAGCCTAGCAGCATCAAATACTTATATTTCTCTGAATCTTTACAGAAA
AGACAGTTAGAGGCAAAAGCAAGAGCTGTTATGAGGAAGTTAAAGGAAGCAAAAGAGATTCAGAAAGCTGTAGTAAACAAGAAAAAGCTTCCTAAGAAAT
TCAGAATAAATAATGAATTGATTGAGATTGATTACTCTTTTAAAACTAAGCTCGAAGAGCTTAGTGACGACGAAGCTATTGAACTCCTTAAAGCTTCACT
GATTAACGGAAGAGAAGGATTTTTTTGTCTGAAATCAAACAGGAATTTGACACTTCAAGATGCGTTAGTAACATACAGAAAAAAGGATTCTATTGAGAAA
ATATTCCATTCATTGAAAAACGAAATTCAGATTAAGCCGTTAAGAGTGTGGTCGGAGGATAGCATTTATGGAGCTATTATCCTTGGATTTATCGCTCAAT
TATTCATATCGCTGATGCGATATGAATTTGAAGAGCTAAAACACACCTCTACAAAATTCATTAAAAAAAGCTTGAAGAATTTGACACTTACAATCAAGTT
CAGGATAAATGGCGTCAAAAACTATATTTTTGCGAATTTTGACAGGATCAATAGCTTGATAGTAGCAAAATGGAATGGAATTACATAGAATATGTAAGAA
ATTTTTATAAAATTGAACGAATTGTCAAGTCAAATTGGGACAAAAAAGAAGGGAAAAATAAAGTATCAATTAGTGGATGCTGTCAAACTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa581488+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNITKHRAFPTIPNKNICVPIGPILAVQLFYEKLNFCDIFSKHKSKGLDLNSLIIGLLSYKLTENFSIKEAGKWLNQKEILDILNLEQFHERVLYRTLEL
LGRNREEILSDILDSLFSVYDFEETDINLDWTSIVLFGTKSKLGKYGYSRDYRPDKLQITVGISELANPINIPIGVTVNRGNVLDLEHFSDTYNQVKSKL
KKGSLIIFDKGANTTDNLKSIQDAEMEYLTAMKLNTSDDKIIENFYLEKAELIDSEKGIYGIKIVKPSSIKYLYFSESLQKRQLEAKARAVMRKLKEAKE
IQKAVVNKKKLPKKFRINNELIEIDYSFKTKLEELSDDEAIELLKASLINGREGFFCLKSNRNLTLQDALVTYRKKDSIEKIFHSLKNEIQIKPLRVWSE
DSIYGAIILGFIAQLFISLMRYEFEELKHTSTKFIKKSLKNLTLTIKFRINGVKNYIFANFDRINSLIVAKWNGIT

 

Blast result :
Comments
ISMma20 is 92% aa similar to ISMac23.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461