ISMbu11

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007955 ND Methanococcoides burtonii
Methanococcoides burtonii
DNA section
IS Length : 1278 bp

Ends


IR Length : 18

IRL : GAGATTATCAAATTAGCTTTTCGCTTTAAAAACGTAACTCTTTTTTCAAG
IRR : GAGATTATCAAATTAGCTCATAAATCCTCCCATTCTAATTTGATGACATT

Insertion site


Left flankDirect repeatRight flankDR Length
TAAAAGCTCATCATAAGTGTAAAAAAATAATTCAGTC5

DNA sequence

GAGATTATCAAATTAGCTTTTCGCTTTAAAAACGTAACTCTTTTTTCAAGACTACTGGCACCACTCTGGGCATAGCTTATGCATTGCATTTATATAGCAG
AAAATGTACCAGCCCATGAAATATTATTACGATGTTTCGGACGGAATCTGTACCAGAGATTCAATTGCTAACTATCTGAACACAGATAATGCATCAATAT
GCCAATTTTTGTATTTCTTAGATATCGATGACATTGCTTCTTATGTTGAAAGTAGCTATTATGCCGATAAGGACTGGCACTTTCGGTATAAGGTTTCGTC
AATGATAAAGCTCATCGTTGTGAAATGTTATAGAAACCTCTCATTTGAGAAAACAATATCGACCTTAACAAAAGAAGAAGCGCAGCTTCTTTCTTTTGAA
GACAATAACGGCATTATGAATCTTCCATCCCCTGCAACACTGCATCATTTTGTAAAATACAGACTTGGAAAAACTGGACTCGATGAAGTAATGTTCAAAA
TTGGAAAGAATATCTCCAAAAATACAAAGATTAGAGATGCGAAAACAGATTCAACTCCACTTGAAGCATCAAGATATGACAAGTATGCAGATTACAATCC
GCATTATAATTGTAAGATGGACAAAGCTCACATCACCATGATTGGAACACTTCCAATCTACATGACTCATACAAAAGGTGCTTCTCACGATTCTCCTGAA
TTGAAGAAACATATTGATGCATTGGTAGAAATGGGAGTTGACATTGACACTTATGCATTGGATGGAGGTTATGATTCATTCAGGAATCATGCAGATATCT
GGTATAAGTTGAATGCAAAACCAGTGATTGCATACTCTTCGGATTCTAAAGTTCAATACGAGGGAATGATGGAAAGAATTGATCACTGGGTTAACAAAAT
GTGGAAACTTGGTGGATCTATTCATATGAAATATGAAGAAAAACTTCATTTCCTCTATGAAAATGGAAGAGAAAAACAGGTAGGTATGCACTTGCGAAAC
AAGAATATCAAAGATGATGGATTCGATGAAGATTATTCGCACAGGGGTGAATGTGAACGAGTACACAATCATATTAAGTTGACTGTAAAGTTCGACATCA
GAGGAATGAAAAATGGCAGTAAGAAACTGTATTCAGTTATGAATTTCGTTGCATATCAATTGCTTGTAGCTACAAATTTGCAAAATGGAGTTAAAGAAAC
TAACTCATTTGCAAATTATGTATGAGGTAATGTCATCAAATTAGAATGGGAGGATTTATGAGCTAATTTGATAATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1122 bp373 aa1041225+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MYQPMKYYYDVSDGICTRDSIANYLNTDNASICQFLYFLDIDDIASYVESSYYADKDWHFRYKVSSMIKLIVVKCYRNLSFEKTISTLTKEEAQLLSFED
NNGIMNLPSPATLHHFVKYRLGKTGLDEVMFKIGKNISKNTKIRDAKTDSTPLEASRYDKYADYNPHYNCKMDKAHITMIGTLPIYMTHTKGASHDSPEL
KKHIDALVEMGVDIDTYALDGGYDSFRNHADIWYKLNAKPVIAYSSDSKVQYEGMMERIDHWVNKMWKLGGSIHMKYEEKLHFLYENGREKQVGMHLRNK
NIKDDGFDEDYSHRGECERVHNHIKLTVKFDIRGMKNGSKKLYSVMNFVAYQLLVATNLQNGVKETNSFANYV

 

Blast result :
Comments
ISMbu11 is 41% aa similar to IS4Sa.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank