ISMbu10

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007955 ND Methanococcoides burtonii
Methanococcoides burtonii
DNA section
IS Length : 789 bp

Ends


IR Length : 16/17

IRL : GGCTCTGTAGAAATCGTTATTATAACTTCAACTAAGCCATTCATTTTTAT
IRR : GGCTCTGTAGAAATCCTCATCCAAACTAAAAACACAGTCTTGATGAACTT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTCTGTAGAAATCGTTATTATAACTTCAACTAAGCCATTCATTTTTATAATAATAAATCCCCTGTGATTGATCTCCAACTTAAATACAAGGGGATGAA
TGTGTTTGTTCCAAATTATAAATCTGAAACACACTTCAAAAATTTGTTACTCGTACATATTCTGTTGTTTTGGATTCGATCTTTAAAAGAACACTGGACC
TATTTTACAAAAACAGAGACTCTATAGACATTACTGCAATTGATTCCACTGGATTTACAAGTGGTTATTGTAGTAATTATTATTCTTGGAGAATCAAAAA
ATGGAGACGAAGTTACGTTAAAACTAGTATTTCGGTTGATGTTCATAAATTTGTAATCACTGGTTACAAGATTTCTGGAAAACCAGTTCATGATGCAAAA
CATGCAAAGGCATTGCTATCGCAATGTCATCACAATAGGAGATCAAGATATTATGTGGTGGATAAAGCCTATGATTCTGAAAACATACACGAGTTGACGA
GGGAAAAACTTGGATCAATAGCAATTGTTCCATTGAGACAACGTGAAAGAAAGCGAATCAAGGGAAGATATCGGAAGAAGATGATACATGAATTTGATAG
CAAGATATACTCTATGCGGAATTTAAGTGAAACGATGTTCTCGGTTTTGAAAAGAAGGTATGGGGATAACTTACGTGCGAGAAAGTACAGAAATCAAGTA
AAAGAAGTGAAGTTCAAAGTGATATTACACAATCTTGATAAGTTCATCAAGACTGTGTTTTTAGTTTGGATGAGGATTTCTACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
780 bp259 aa170949+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSIFKRTLDLFYKNRDSIDITAIDSTGFTSGYCSNYYSWRIKKWRRSYVKTSISVDVHKFVITGYKISGKPVHDAKHAKALLSQCHHNRRSRYYVVDKA
YDSENIHELTREKLGSIAIVPLRQRERKRIKGRYRKKMIHEFDSKIYSMRNLSETMFSVLKRRYGDNLRARKYRNQVKEVKFKVILHNLDKFIKTVFLVW
MRISTEPFFLMFLCQSSFSSFNLKTSIPAPRHAVILLLSISAQTMPRRISSTSTPYFSA

 

Blast result :
Comments
ISMbu10 is 47% aa similar to ISC1058.
There are no STOP codon, the transposase use the first stop codon after the end of the IRR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank