ISC1043
- Family ISNCY
- Group ISA1214
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus |
DNA section
IS Length : 1043 bp
Ends
IR Length : 13/14
IRL : GACTCTGGGACAAAAACTTTAGATACCCCTTATTTTGTATCATGAACACA
IRR : GAGTCTGGGACAAATTAGTCTAATGGGTTTCCAAATTTATATAGCATTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GACTCTGGGACAAAAACTTTAGATACCCCTTATTTTGTATCATGAACACATGAATAAGAAGTTAACTCAGAAAGACTTCGACAATTTCAAGGAGTCAATA
GAGGACTTGATCAAGTTGCACAAGGAAAGTAGGCTCAGTAAGATAGAGAACAATAAGGAGAGCGAAGAAGAGAGGTTAGCCAGATTAAGAAGATTCGGTC
GAGAGTTAAGACTTAGAGGAGGCAAAGTTCGTCAAGATCAAGAAAGAACAAGGGAGAAAAAGCAAACTAACCCCACAAGAGAAGGCATACATACTGATAA
TCAAGGAATATCTAGGCTTATCCAACAGGGAAACCGCAGAACTAGCATTACTACTGAACCTAACGAAGGAGGAGATAAGCCACAAGACAGTAGAGAGACT
ATACTCCCACCCCACATCTTCGTCATCCTCTACAACCTACTCTCAAAGACCGCTAGTGGCCTCAAGGTGGTCATGGACAGGACAGGTTATTCCCTAGTAG
TAACCAAGCATTAAAGGAGTGAAAGGGAGAAGTCTGGGGAAGATGTGAAGGAAGGAGTTCGCGTACTCCTTCTTCATCTTTGACTTGGGTAGTAACTTGA
TTGTCGCTTACGGTTATTCGCTTAAGAGTGAGAGGGAGGCTTATGAGATGGTCCTCGAGGTCCTGAGGGATCTTGGTGTAAAGGTTGACTCCTTGAGGGC
TGACAAGTACTATAGCAAGTCTATACTGGATGACTTCCCTGATTCTGAGAACTTGATACCCTAACGCTACGATCAAGGGAGGGAAAAGGTGGAGGGAGAT
GATATTGAAGTTCATGAAGAACCCACTGGAGTATTTGGAGGAGTATTTTAAGCGTGAGAGGCTCTGATCTTCATTAAAAGGAGGACAGGGTGGATCATAA
ATAAGGTCAGGGAAGAGAGGATCCACTTGACGGTCTTAGCGAGGGTCGCGATTCACGATCTACTGTGGTCTAAAGCGCTAGATTAAAAATCCCGAAATGC
TATATAAATTTGGAAACCCATTAGACTAATTTGTCCCAGACTC
GAGGACTTGATCAAGTTGCACAAGGAAAGTAGGCTCAGTAAGATAGAGAACAATAAGGAGAGCGAAGAAGAGAGGTTAGCCAGATTAAGAAGATTCGGTC
GAGAGTTAAGACTTAGAGGAGGCAAAGTTCGTCAAGATCAAGAAAGAACAAGGGAGAAAAAGCAAACTAACCCCACAAGAGAAGGCATACATACTGATAA
TCAAGGAATATCTAGGCTTATCCAACAGGGAAACCGCAGAACTAGCATTACTACTGAACCTAACGAAGGAGGAGATAAGCCACAAGACAGTAGAGAGACT
ATACTCCCACCCCACATCTTCGTCATCCTCTACAACCTACTCTCAAAGACCGCTAGTGGCCTCAAGGTGGTCATGGACAGGACAGGTTATTCCCTAGTAG
TAACCAAGCATTAAAGGAGTGAAAGGGAGAAGTCTGGGGAAGATGTGAAGGAAGGAGTTCGCGTACTCCTTCTTCATCTTTGACTTGGGTAGTAACTTGA
TTGTCGCTTACGGTTATTCGCTTAAGAGTGAGAGGGAGGCTTATGAGATGGTCCTCGAGGTCCTGAGGGATCTTGGTGTAAAGGTTGACTCCTTGAGGGC
TGACAAGTACTATAGCAAGTCTATACTGGATGACTTCCCTGATTCTGAGAACTTGATACCCTAACGCTACGATCAAGGGAGGGAAAAGGTGGAGGGAGAT
GATATTGAAGTTCATGAAGAACCCACTGGAGTATTTGGAGGAGTATTTTAAGCGTGAGAGGCTCTGATCTTCATTAAAAGGAGGACAGGGTGGATCATAA
ATAAGGTCAGGGAAGAGAGGATCCACTTGACGGTCTTAGCGAGGGTCGCGATTCACGATCTACTGTGGTCTAAAGCGCTAGATTAAAAATCCCGAAATGC
TATATAAATTTGGAAACCCATTAGACTAATTTGTCCCAGACTC
Protein section
ORF number : 0
Comments
There are Stop codons in the gene of the transposase, BLASTX result : 46% aa similar to ISA1214.
References
[1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., DeMoors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840