ISC1043

  • Family ISNCY
  • Group ISA1214
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus
DNA section
IS Length : 1043 bp

Ends


IR Length : 13/14

IRL : GACTCTGGGACAAAAACTTTAGATACCCCTTATTTTGTATCATGAACACA
IRR : GAGTCTGGGACAAATTAGTCTAATGGGTTTCCAAATTTATATAGCATTTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GACTCTGGGACAAAAACTTTAGATACCCCTTATTTTGTATCATGAACACATGAATAAGAAGTTAACTCAGAAAGACTTCGACAATTTCAAGGAGTCAATA
GAGGACTTGATCAAGTTGCACAAGGAAAGTAGGCTCAGTAAGATAGAGAACAATAAGGAGAGCGAAGAAGAGAGGTTAGCCAGATTAAGAAGATTCGGTC
GAGAGTTAAGACTTAGAGGAGGCAAAGTTCGTCAAGATCAAGAAAGAACAAGGGAGAAAAAGCAAACTAACCCCACAAGAGAAGGCATACATACTGATAA
TCAAGGAATATCTAGGCTTATCCAACAGGGAAACCGCAGAACTAGCATTACTACTGAACCTAACGAAGGAGGAGATAAGCCACAAGACAGTAGAGAGACT
ATACTCCCACCCCACATCTTCGTCATCCTCTACAACCTACTCTCAAAGACCGCTAGTGGCCTCAAGGTGGTCATGGACAGGACAGGTTATTCCCTAGTAG
TAACCAAGCATTAAAGGAGTGAAAGGGAGAAGTCTGGGGAAGATGTGAAGGAAGGAGTTCGCGTACTCCTTCTTCATCTTTGACTTGGGTAGTAACTTGA
TTGTCGCTTACGGTTATTCGCTTAAGAGTGAGAGGGAGGCTTATGAGATGGTCCTCGAGGTCCTGAGGGATCTTGGTGTAAAGGTTGACTCCTTGAGGGC
TGACAAGTACTATAGCAAGTCTATACTGGATGACTTCCCTGATTCTGAGAACTTGATACCCTAACGCTACGATCAAGGGAGGGAAAAGGTGGAGGGAGAT
GATATTGAAGTTCATGAAGAACCCACTGGAGTATTTGGAGGAGTATTTTAAGCGTGAGAGGCTCTGATCTTCATTAAAAGGAGGACAGGGTGGATCATAA
ATAAGGTCAGGGAAGAGAGGATCCACTTGACGGTCTTAGCGAGGGTCGCGATTCACGATCTACTGTGGTCTAAAGCGCTAGATTAAAAATCCCGAAATGC
TATATAAATTTGGAAACCCATTAGACTAATTTGTCCCAGACTC
Protein section
ORF number : 0

 

Comments
There are Stop codons in the gene of the transposase, BLASTX result : 46% aa similar to ISA1214.
References
[1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., DeMoors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840