ISTvo1

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002689 ND Thermoplasma volcanium
Thermoplasma volcanium
DNA section
IS Length : 1897 bp

Ends


IR Length : 0

IRL : TATGGTTAATTAAAACGATAATGATGTATACCTATTATGTATAATACATT
IRR : AGGTTACGATTTCTGTTAACAATGTTAACAGCCACCTTTGGAAGTTATCA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TATGGTTAATTAAAACGATAATGATGTATACCTATTATGTATAATACATTGACCATGAAAGCTGAAGAAGTTTTGAATTTATTGCAGATATCCAGAAAAA
CTCTTCATGTCTATTCAAAGGATGGCAGGATCAGGTACACTGTGATGCCGAACAAACGATACAATTACAATGAGGAAGACGTTTATAAAATCCTTAACAA
GGATGTTAAGAGAAAAACTGTGCTGTATGAACGTGTATCAACGGCAAAGCAGAAGAACGATCTTCAGAACCAGATGAAGCAGTAGTGTTTCATGAACGGA
TATACAATAAGTGCAATATACGCCCATATTGCATCCGGAATATCATTGGAGAAACGGAAAGGATTCTTTGAGATGTTAGATGAGATCATAAACAATAAGG
TGGAAAAAGTCATAATAACCTATAAGGACAGGCTAAGCAGGGTTGGTTTCGATCTCTTTAGTTACCTGTTCAGGAAGTACAGGACAGAGATAGCTGTTAT
CTCGGAAGTAGGCAATACAAAACTTGATTCTGAGGAAGTCTTTGAAGAAATAGTTTCAATGCTGCACTCTTACTCCATGAAGATGTATTCCAAACGAAAG
AATCACTACATCGAGGTCGGGTATGAAGGTTAGGAGAACAGAACAGATATACCTGAAGGAAAATGATACCATCTCATATATGTGCCATCTCTCCAAGAAT
CTCTACAACCAGGTCAACTACATTCTCAGGCAGCAGTTCCTGAAGGGGGAGAAACTCACTGGCTATAGGGATCTTGTGAAGTTATTCCAGGAACCATCCG
AGATAGAGGATCACAACAACTACCAGAGGTTGCCGGCACAGACAGCACAGTGGACAGTAAAGAAGACTGTAATGGCATGGTATTCATTCTTCAAGTCCAT
GAAAGCATGGAAGAAGCATCCTGATAAATTCAAGGGAAGGCCTAGATTGCCGGGATATAAGGAAACAGATGGTGAGTTCCTGCTTGTCTTTACGAATCAG
CAGTGCAGGATCAGGGATGGTATACTGAAATTCCCTAAGATAATGAACATGGAGGTAAAAACAAGGCTGAATGAAAATGAAATTAAGCTGAAAGAAGTAA
GGATAGTGCCTCAGGGCACAGGATACATGATAGAAATAGTGTACGAGAAGGAGACAGCGGACATGCCTATAACAAAACCGAAAAGGGCCATGGGCATCGA
CATCGGTGTGAGGAATCTTGTAACTATAGGTAACAACATCCATGAAATAGGGATTGCTGTAAAGGCAGGATTGCTCAAATCGATCAACCAGTACTTCAAC
AAGGAGCTTGCAAGGTATAGGAGCATAAACGATCTCCAGGGAAATGAGAGAAAACAGACAGTGAAGATAAGAAAACTCTTCATGAAGAGAAACAGGAAAG
TCAAGGACATCATGCATAAGGTTTCGAAATCCATTGTGGAGTATGCAAAGATCATGAACATCGATACAATAGTTATAGGCCATAACAACAGATGGAAGGA
TTCATCCAACATGGGAAAGAAGAATAACCAGAACTTTGTCCAGCTGCCATTCAACATGCTCATATACCAGATAAAATACAAAGCCGAAGAGATTGGGATC
ACTGTCATAATGCAGAACGAGGATTACACAAGCAAATGTTCATTCCTGGACAATGAGAGCATAGAACATCATGACACATACATGGGCAAGCGGATTCATA
GGGGCATATTCCGATCTGCAACTGGAAAGTTGATTCATGCTGATCTACAGTCTTCGTACAACATAATAAAGAAAGCAATCCCCGAAGCTTTTGCTAACGG
GATAGAGGGTATAGGGTTATATCCACGAAGTTTAAGCATAAGACAGATGATAACTTCCAAAGGTGGCTGTTAACATTGTTAACAGAAATCGTAACCT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
579 bp192 aa55633+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MKAEEVLNLLQISRKTLHVYSKDGRIRYTVMPNKRYNYNEEDVYKILNKDVKRKTVLYERVSTAKQKNDLQNQMKQXCFMNGYTISAIYAHIASGISLEK
RKGFFEMLDEIINNKVEKVIITYKDRLSRVGFDLFSYLFRKYRTEIAVISEVGNTKLDSEEVFEEIVSMLHSYSMKMYSKRKNHYIEVGYEG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1251 bp416 aa6231873+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKVRRTEQIYLKENDTISYMCHLSKNLYNQVNYILRQQFLKGEKLTGYRDLVKLFQEPSEIEDHNNYQRLPAQTAQWTVKKTVMAWYSFFKSMKAWKKHP
DKFKGRPRLPGYKETDGEFLLVFTNQQCRIRDGILKFPKIMNMEVKTRLNENEIKLKEVRIVPQGTGYMIEIVYEKETADMPITKPKRAMGIDIGVRNLV
TIGNNIHEIGIAVKAGLLKSINQYFNKELARYRSINDLQGNERKQTVKIRKLFMKRNRKVKDIMHKVSKSIVEYAKIMNIDTIVIGHNNRWKDSSNMGKK
NNQNFVQLPFNMLIYQIKYKAEEIGITVIMQNEDYTSKCSFLDNESIEHHDTYMGKRIHRGIFRSATGKLIHADLQSSYNIIKKAIPEAFANGIEGIGLY
PRSLSIRQMITSKGGC

 

Blast result :
Comments
ORF1 is 58% aa similar to IS1921
ORF2 is 47% aa similar to ISSto1
References
[1] Kawashima,T., Amano,N., Koike,H., Makino,S., Higuchi,S.,
Kawashima-Ohya,Y., Watanabe,K., Yamazaki,M., Kanehori,K.,
Kawamoto,T., Nunoshiba,T., Yamamoto,Y., Aramaki,H., Makino,K. and
Suzuki,M. (2000) Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262