ISTvo1
- Family IS607
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002689 | ND | Thermoplasma volcanium | Thermoplasma volcanium |
DNA section
IS Length : 1897 bp
Ends
IR Length : 0
IRL : TATGGTTAATTAAAACGATAATGATGTATACCTATTATGTATAATACATT
IRR : AGGTTACGATTTCTGTTAACAATGTTAACAGCCACCTTTGGAAGTTATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TATGGTTAATTAAAACGATAATGATGTATACCTATTATGTATAATACATTGACCATGAAAGCTGAAGAAGTTTTGAATTTATTGCAGATATCCAGAAAAA
CTCTTCATGTCTATTCAAAGGATGGCAGGATCAGGTACACTGTGATGCCGAACAAACGATACAATTACAATGAGGAAGACGTTTATAAAATCCTTAACAA
GGATGTTAAGAGAAAAACTGTGCTGTATGAACGTGTATCAACGGCAAAGCAGAAGAACGATCTTCAGAACCAGATGAAGCAGTAGTGTTTCATGAACGGA
TATACAATAAGTGCAATATACGCCCATATTGCATCCGGAATATCATTGGAGAAACGGAAAGGATTCTTTGAGATGTTAGATGAGATCATAAACAATAAGG
TGGAAAAAGTCATAATAACCTATAAGGACAGGCTAAGCAGGGTTGGTTTCGATCTCTTTAGTTACCTGTTCAGGAAGTACAGGACAGAGATAGCTGTTAT
CTCGGAAGTAGGCAATACAAAACTTGATTCTGAGGAAGTCTTTGAAGAAATAGTTTCAATGCTGCACTCTTACTCCATGAAGATGTATTCCAAACGAAAG
AATCACTACATCGAGGTCGGGTATGAAGGTTAGGAGAACAGAACAGATATACCTGAAGGAAAATGATACCATCTCATATATGTGCCATCTCTCCAAGAAT
CTCTACAACCAGGTCAACTACATTCTCAGGCAGCAGTTCCTGAAGGGGGAGAAACTCACTGGCTATAGGGATCTTGTGAAGTTATTCCAGGAACCATCCG
AGATAGAGGATCACAACAACTACCAGAGGTTGCCGGCACAGACAGCACAGTGGACAGTAAAGAAGACTGTAATGGCATGGTATTCATTCTTCAAGTCCAT
GAAAGCATGGAAGAAGCATCCTGATAAATTCAAGGGAAGGCCTAGATTGCCGGGATATAAGGAAACAGATGGTGAGTTCCTGCTTGTCTTTACGAATCAG
CAGTGCAGGATCAGGGATGGTATACTGAAATTCCCTAAGATAATGAACATGGAGGTAAAAACAAGGCTGAATGAAAATGAAATTAAGCTGAAAGAAGTAA
GGATAGTGCCTCAGGGCACAGGATACATGATAGAAATAGTGTACGAGAAGGAGACAGCGGACATGCCTATAACAAAACCGAAAAGGGCCATGGGCATCGA
CATCGGTGTGAGGAATCTTGTAACTATAGGTAACAACATCCATGAAATAGGGATTGCTGTAAAGGCAGGATTGCTCAAATCGATCAACCAGTACTTCAAC
AAGGAGCTTGCAAGGTATAGGAGCATAAACGATCTCCAGGGAAATGAGAGAAAACAGACAGTGAAGATAAGAAAACTCTTCATGAAGAGAAACAGGAAAG
TCAAGGACATCATGCATAAGGTTTCGAAATCCATTGTGGAGTATGCAAAGATCATGAACATCGATACAATAGTTATAGGCCATAACAACAGATGGAAGGA
TTCATCCAACATGGGAAAGAAGAATAACCAGAACTTTGTCCAGCTGCCATTCAACATGCTCATATACCAGATAAAATACAAAGCCGAAGAGATTGGGATC
ACTGTCATAATGCAGAACGAGGATTACACAAGCAAATGTTCATTCCTGGACAATGAGAGCATAGAACATCATGACACATACATGGGCAAGCGGATTCATA
GGGGCATATTCCGATCTGCAACTGGAAAGTTGATTCATGCTGATCTACAGTCTTCGTACAACATAATAAAGAAAGCAATCCCCGAAGCTTTTGCTAACGG
GATAGAGGGTATAGGGTTATATCCACGAAGTTTAAGCATAAGACAGATGATAACTTCCAAAGGTGGCTGTTAACATTGTTAACAGAAATCGTAACCT
CTCTTCATGTCTATTCAAAGGATGGCAGGATCAGGTACACTGTGATGCCGAACAAACGATACAATTACAATGAGGAAGACGTTTATAAAATCCTTAACAA
GGATGTTAAGAGAAAAACTGTGCTGTATGAACGTGTATCAACGGCAAAGCAGAAGAACGATCTTCAGAACCAGATGAAGCAGTAGTGTTTCATGAACGGA
TATACAATAAGTGCAATATACGCCCATATTGCATCCGGAATATCATTGGAGAAACGGAAAGGATTCTTTGAGATGTTAGATGAGATCATAAACAATAAGG
TGGAAAAAGTCATAATAACCTATAAGGACAGGCTAAGCAGGGTTGGTTTCGATCTCTTTAGTTACCTGTTCAGGAAGTACAGGACAGAGATAGCTGTTAT
CTCGGAAGTAGGCAATACAAAACTTGATTCTGAGGAAGTCTTTGAAGAAATAGTTTCAATGCTGCACTCTTACTCCATGAAGATGTATTCCAAACGAAAG
AATCACTACATCGAGGTCGGGTATGAAGGTTAGGAGAACAGAACAGATATACCTGAAGGAAAATGATACCATCTCATATATGTGCCATCTCTCCAAGAAT
CTCTACAACCAGGTCAACTACATTCTCAGGCAGCAGTTCCTGAAGGGGGAGAAACTCACTGGCTATAGGGATCTTGTGAAGTTATTCCAGGAACCATCCG
AGATAGAGGATCACAACAACTACCAGAGGTTGCCGGCACAGACAGCACAGTGGACAGTAAAGAAGACTGTAATGGCATGGTATTCATTCTTCAAGTCCAT
GAAAGCATGGAAGAAGCATCCTGATAAATTCAAGGGAAGGCCTAGATTGCCGGGATATAAGGAAACAGATGGTGAGTTCCTGCTTGTCTTTACGAATCAG
CAGTGCAGGATCAGGGATGGTATACTGAAATTCCCTAAGATAATGAACATGGAGGTAAAAACAAGGCTGAATGAAAATGAAATTAAGCTGAAAGAAGTAA
GGATAGTGCCTCAGGGCACAGGATACATGATAGAAATAGTGTACGAGAAGGAGACAGCGGACATGCCTATAACAAAACCGAAAAGGGCCATGGGCATCGA
CATCGGTGTGAGGAATCTTGTAACTATAGGTAACAACATCCATGAAATAGGGATTGCTGTAAAGGCAGGATTGCTCAAATCGATCAACCAGTACTTCAAC
AAGGAGCTTGCAAGGTATAGGAGCATAAACGATCTCCAGGGAAATGAGAGAAAACAGACAGTGAAGATAAGAAAACTCTTCATGAAGAGAAACAGGAAAG
TCAAGGACATCATGCATAAGGTTTCGAAATCCATTGTGGAGTATGCAAAGATCATGAACATCGATACAATAGTTATAGGCCATAACAACAGATGGAAGGA
TTCATCCAACATGGGAAAGAAGAATAACCAGAACTTTGTCCAGCTGCCATTCAACATGCTCATATACCAGATAAAATACAAAGCCGAAGAGATTGGGATC
ACTGTCATAATGCAGAACGAGGATTACACAAGCAAATGTTCATTCCTGGACAATGAGAGCATAGAACATCATGACACATACATGGGCAAGCGGATTCATA
GGGGCATATTCCGATCTGCAACTGGAAAGTTGATTCATGCTGATCTACAGTCTTCGTACAACATAATAAAGAAAGCAATCCCCGAAGCTTTTGCTAACGG
GATAGAGGGTATAGGGTTATATCCACGAAGTTTAAGCATAAGACAGATGATAACTTCCAAAGGTGGCTGTTAACATTGTTAACAGAAATCGTAACCT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
579 bp | 192 aa | 55 | 633 | + | No |
Chemistry : Serine
ORF sequence :
MKAEEVLNLLQISRKTLHVYSKDGRIRYTVMPNKRYNYNEEDVYKILNKDVKRKTVLYERVSTAKQKNDLQNQMKQXCFMNGYTISAIYAHIASGISLEK
RKGFFEMLDEIINNKVEKVIITYKDRLSRVGFDLFSYLFRKYRTEIAVISEVGNTKLDSEEVFEEIVSMLHSYSMKMYSKRKNHYIEVGYEG
RKGFFEMLDEIINNKVEKVIITYKDRLSRVGFDLFSYLFRKYRTEIAVISEVGNTKLDSEEVFEEIVSMLHSYSMKMYSKRKNHYIEVGYEG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 623 | 1873 | + | No |
AG : TnpB
ORF sequence :
MKVRRTEQIYLKENDTISYMCHLSKNLYNQVNYILRQQFLKGEKLTGYRDLVKLFQEPSEIEDHNNYQRLPAQTAQWTVKKTVMAWYSFFKSMKAWKKHP
DKFKGRPRLPGYKETDGEFLLVFTNQQCRIRDGILKFPKIMNMEVKTRLNENEIKLKEVRIVPQGTGYMIEIVYEKETADMPITKPKRAMGIDIGVRNLV
TIGNNIHEIGIAVKAGLLKSINQYFNKELARYRSINDLQGNERKQTVKIRKLFMKRNRKVKDIMHKVSKSIVEYAKIMNIDTIVIGHNNRWKDSSNMGKK
NNQNFVQLPFNMLIYQIKYKAEEIGITVIMQNEDYTSKCSFLDNESIEHHDTYMGKRIHRGIFRSATGKLIHADLQSSYNIIKKAIPEAFANGIEGIGLY
PRSLSIRQMITSKGGC
DKFKGRPRLPGYKETDGEFLLVFTNQQCRIRDGILKFPKIMNMEVKTRLNENEIKLKEVRIVPQGTGYMIEIVYEKETADMPITKPKRAMGIDIGVRNLV
TIGNNIHEIGIAVKAGLLKSINQYFNKELARYRSINDLQGNERKQTVKIRKLFMKRNRKVKDIMHKVSKSIVEYAKIMNIDTIVIGHNNRWKDSSNMGKK
NNQNFVQLPFNMLIYQIKYKAEEIGITVIMQNEDYTSKCSFLDNESIEHHDTYMGKRIHRGIFRSATGKLIHADLQSSYNIIKKAIPEAFANGIEGIGLY
PRSLSIRQMITSKGGC
Blast result :
Comments
ORF1 is 58% aa similar to IS1921
ORF2 is 47% aa similar to ISSto1
ORF2 is 47% aa similar to ISSto1
References
[1] Kawashima,T., Amano,N., Koike,H., Makino,S., Higuchi,S.,
Kawashima-Ohya,Y., Watanabe,K., Yamazaki,M., Kanehori,K.,
Kawamoto,T., Nunoshiba,T., Yamamoto,Y., Aramaki,H., Makino,K. and
Suzuki,M. (2000) Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262
Kawashima-Ohya,Y., Watanabe,K., Yamazaki,M., Kanehori,K.,
Kawamoto,T., Nunoshiba,T., Yamamoto,Y., Aramaki,H., Makino,K. and
Suzuki,M. (2000) Proc. Natl. Acad. Sci. U.S.A. 97 (26), 14257-14262