ISTko1
- Family IS607
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006624 | ND | Thermococcus kodakarensis | Thermococcus kodakarensis KOD1 |
DNA section
IS Length : 1960 bp
Ends
IR Length : 0
IRL : GCCTTCTTTAACTGTTTCTCTTAACCAAAAACTTTAAATGTTTTTGTGAT
IRR : GGGGTCTGTCCGTCGTGAGTTTTAGGGAGGAACGTGAGTGAACCTCCCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GCCTTCTTTAACTGTTTCTCTTAACCAAAAACTTTAAATGTTTTTGTGATTAATTGTGAGTATATGGTAGTGAAAGAGAAGCTTTACACGGTTAAGCAGG
CGAGCGAAATCCTCGGAGTTCATCCAAAAACAATCCAAAAATGGGATAAGGAAGGGAAAATCAAAACCATTAGAACACCCGGCGGGCGAAGGAGAATACC
AGAAAGCGAAATAAAAAGACTTCTCGGCATAAGCGAAGAAAAAGGCCTAATCATTGGCTATGCGAGAGTCTCAAGCCACACACAAAAAGACGACTTGGAA
AGACAGGTTGAAGCTATCAAGCAATACGCAAAAGAACGAGGCTGGCAAGTCCAAATACTCAAAGACATCGGTTCAGGATTGAACGAGAAGAGGAAAAATT
ATCGCAAGCTCCTCGAACTCGTCGCAAAAGGAGAAGTCTCAAAAGTCATCATCACACATCCAGATAGGCTCACCCGCTTTGGCTTCAAAACTCTCGAATT
CTTCTTCAAGGAAAACGGTTCAGAGATAATCGTAATCAACGAGAAAGAAAAACCCCCACGAGAAGAACTCATTGAAGACTTGATAACCATAATCTCGCAC
TTCGCTGGAAAGCTCTACGGAATGCGTTCTCACAAATACAAAAAGCTCAAGAAGGGCATGAAAAAACTAATCGAGGAGGTCGAGAATGACTAAACTTGTT
CTCACATACAGAATGTCGCACAACTGGAACGTTAATTCGTTCCTAAAAGAATACCAAAGACTTCTCCAGAGGGCAATTGATGAAATATCGGAGAACACGA
CTTGGAGAGAGAAGAAAGTCACGCACAGGTATTCCGTTGGAAGCAGGAATTATCACTACTATGAGACGACCCGCCTAATCCCGTATTTTCCACAGTCGAA
TGAGTTTAAGCGAGAATTAAGGAACAAACTCCTCAAGGACTGGCCTTTCGCCAAGCACTACATTGATTCTGCTATAAAGACCGCTTATTCAATCCTCAAA
AGCTGGAGAGGGAACTACCTCAAAGGGAAGAGAAAAAGAGCGAAGCCAGTCGTTAAGAGAAAGTTCGTGAGGGTGAAAACAACTCTAATGAAGGTTGAAG
GCTCAAGGATACGAATCACAGTTAAGCCTCGTGAGGAATACCTCGAGCTGGACTTCTCAAAGGAGTGGTTCTATGAAAGGGTTAAGGACTGGAAGGTCGG
TGAACTAATAATCAGGGAGAACGACGTTCTACTAACGTTCTCAAAAGAAGTCGAGTTCTCTGGAAGAATCAAAATCGGTATTGATAGTAACTTAACGAGC
CTCGATATTTTTCACCCTGAAAAAGGCTGGATTAGAGTGGACTTGAGCGAGCTACACAGGATTGCCGAGACTTATGACAGGATTATTGACGGGCTGAAGA
GCGTTCAGCGGAAAGCTCCAAAGAGGATTGGAGTTCTCCTTAAAAAATACTGGACGAGGAGAAGGAACAGGATTGAGGATTATTTGAACAAGCTTGCAGT
CCAGCTTTCAAGAGAGTTCCCTGATGCAGTTTTTGTCTTCGAGGATTTAAACAAGTTCAAAATGCTCCAGAACGGTTCGAGGAAGTTCAACAGGAAGCTC
TCCCGTGCTACTTGGAAGAAAATCGTTGGAAAGCTTTCCTATCGTGTTCCTGTCGAGTTTGTTAATCCTGCTTACACTTCGTCCACCTGCCCGGTGTGTG
GGAGTTGGTTGGAGTCCCGAAACGGGCGGGTGGTTTGTCATAACTGTGGTTTTGAGGCTGACAGGCAGTTTGTTGGTTCGTTCAACGTTTTCGTGCGGGG
ACTTGGGGTCGCCCTGAGCGGGGCTGAGCTTGATGATTTGCTCCCCAATGAACCCAGAGGGGAACTGAACGTGATGAAGCCCAAGTCCGTCGTGAGGGTT
GATTTAAATGGAGGGAGGTTCACTCACGTTCCTCCCTAAAACTCACGACGGACAGACCCC
CGAGCGAAATCCTCGGAGTTCATCCAAAAACAATCCAAAAATGGGATAAGGAAGGGAAAATCAAAACCATTAGAACACCCGGCGGGCGAAGGAGAATACC
AGAAAGCGAAATAAAAAGACTTCTCGGCATAAGCGAAGAAAAAGGCCTAATCATTGGCTATGCGAGAGTCTCAAGCCACACACAAAAAGACGACTTGGAA
AGACAGGTTGAAGCTATCAAGCAATACGCAAAAGAACGAGGCTGGCAAGTCCAAATACTCAAAGACATCGGTTCAGGATTGAACGAGAAGAGGAAAAATT
ATCGCAAGCTCCTCGAACTCGTCGCAAAAGGAGAAGTCTCAAAAGTCATCATCACACATCCAGATAGGCTCACCCGCTTTGGCTTCAAAACTCTCGAATT
CTTCTTCAAGGAAAACGGTTCAGAGATAATCGTAATCAACGAGAAAGAAAAACCCCCACGAGAAGAACTCATTGAAGACTTGATAACCATAATCTCGCAC
TTCGCTGGAAAGCTCTACGGAATGCGTTCTCACAAATACAAAAAGCTCAAGAAGGGCATGAAAAAACTAATCGAGGAGGTCGAGAATGACTAAACTTGTT
CTCACATACAGAATGTCGCACAACTGGAACGTTAATTCGTTCCTAAAAGAATACCAAAGACTTCTCCAGAGGGCAATTGATGAAATATCGGAGAACACGA
CTTGGAGAGAGAAGAAAGTCACGCACAGGTATTCCGTTGGAAGCAGGAATTATCACTACTATGAGACGACCCGCCTAATCCCGTATTTTCCACAGTCGAA
TGAGTTTAAGCGAGAATTAAGGAACAAACTCCTCAAGGACTGGCCTTTCGCCAAGCACTACATTGATTCTGCTATAAAGACCGCTTATTCAATCCTCAAA
AGCTGGAGAGGGAACTACCTCAAAGGGAAGAGAAAAAGAGCGAAGCCAGTCGTTAAGAGAAAGTTCGTGAGGGTGAAAACAACTCTAATGAAGGTTGAAG
GCTCAAGGATACGAATCACAGTTAAGCCTCGTGAGGAATACCTCGAGCTGGACTTCTCAAAGGAGTGGTTCTATGAAAGGGTTAAGGACTGGAAGGTCGG
TGAACTAATAATCAGGGAGAACGACGTTCTACTAACGTTCTCAAAAGAAGTCGAGTTCTCTGGAAGAATCAAAATCGGTATTGATAGTAACTTAACGAGC
CTCGATATTTTTCACCCTGAAAAAGGCTGGATTAGAGTGGACTTGAGCGAGCTACACAGGATTGCCGAGACTTATGACAGGATTATTGACGGGCTGAAGA
GCGTTCAGCGGAAAGCTCCAAAGAGGATTGGAGTTCTCCTTAAAAAATACTGGACGAGGAGAAGGAACAGGATTGAGGATTATTTGAACAAGCTTGCAGT
CCAGCTTTCAAGAGAGTTCCCTGATGCAGTTTTTGTCTTCGAGGATTTAAACAAGTTCAAAATGCTCCAGAACGGTTCGAGGAAGTTCAACAGGAAGCTC
TCCCGTGCTACTTGGAAGAAAATCGTTGGAAAGCTTTCCTATCGTGTTCCTGTCGAGTTTGTTAATCCTGCTTACACTTCGTCCACCTGCCCGGTGTGTG
GGAGTTGGTTGGAGTCCCGAAACGGGCGGGTGGTTTGTCATAACTGTGGTTTTGAGGCTGACAGGCAGTTTGTTGGTTCGTTCAACGTTTTCGTGCGGGG
ACTTGGGGTCGCCCTGAGCGGGGCTGAGCTTGATGATTTGCTCCCCAATGAACCCAGAGGGGAACTGAACGTGATGAAGCCCAAGTCCGTCGTGAGGGTT
GATTTAAATGGAGGGAGGTTCACTCACGTTCCTCCCTAAAACTCACGACGGACAGACCCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
630 bp | 209 aa | 64 | 693 | + | No |
Chemistry : Serine
ORF sequence :
MVVKEKLYTVKQASEILGVHPKTIQKWDKEGKIKTIRTPGGRRRIPESEIKRLLGISEEKGLIIGYARVSSHTQKDDLERQVEAIKQYAKERGWQVQILK
DIGSGLNEKRKNYRKLLELVAKGEVSKVIITHPDRLTRFGFKTLEFFFKENGSEIIVINEKEKPPREELIEDLITIISHFAGKLYGMRSHKYKKLKKGMK
KLIEEVEND
DIGSGLNEKRKNYRKLLELVAKGEVSKVIITHPDRLTRFGFKTLEFFFKENGSEIIVINEKEKPPREELIEDLITIISHFAGKLYGMRSHKYKKLKKGMK
KLIEEVEND
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 686 | 1939 | + | No |
AG : TnpB
ORF sequence :
MTKLVLTYRMSHNWNVNSFLKEYQRLLQRAIDEISENTTWREKKVTHRYSVGSRNYHYYETTRLIPYFPQSNEFKRELRNKLLKDWPFAKHYIDSAIKTA
YSILKSWRGNYLKGKRKRAKPVVKRKFVRVKTTLMKVEGSRIRITVKPREEYLELDFSKEWFYERVKDWKVGELIIRENDVLLTFSKEVEFSGRIKIGID
SNLTSLDIFHPEKGWIRVDLSELHRIAETYDRIIDGLKSVQRKAPKRIGVLLKKYWTRRRNRIEDYLNKLAVQLSREFPDAVFVFEDLNKFKMLQNGSRK
FNRKLSRATWKKIVGKLSYRVPVEFVNPAYTSSTCPVCGSWLESRNGRVVCHNCGFEADRQFVGSFNVFVRGLGVALSGAELDDLLPNEPRGELNVMKPK
SVVRVDLNGGRFTHVPP
YSILKSWRGNYLKGKRKRAKPVVKRKFVRVKTTLMKVEGSRIRITVKPREEYLELDFSKEWFYERVKDWKVGELIIRENDVLLTFSKEVEFSGRIKIGID
SNLTSLDIFHPEKGWIRVDLSELHRIAETYDRIIDGLKSVQRKAPKRIGVLLKKYWTRRRNRIEDYLNKLAVQLSREFPDAVFVFEDLNKFKMLQNGSRK
FNRKLSRATWKKIVGKLSYRVPVEFVNPAYTSSTCPVCGSWLESRNGRVVCHNCGFEADRQFVGSFNVFVRGLGVALSGAELDDLLPNEPRGELNVMKPK
SVVRVDLNGGRFTHVPP
Blast result :
Comments
ISTko1 is 50% (ORF A) and 69% (ORF B) aa similar to IS1921.
References
1] Fukui,T., Atomi,H., Kanai,T., Matsumi,R., Fujiwara,S. and Imanaka,T. (2005) Genome Res. 15 (3), 352-363