ISTko1

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006624 ND Thermococcus kodakarensis
Thermococcus kodakarensis KOD1
DNA section
IS Length : 1960 bp

Ends


IR Length : 0

IRL : GCCTTCTTTAACTGTTTCTCTTAACCAAAAACTTTAAATGTTTTTGTGAT
IRR : GGGGTCTGTCCGTCGTGAGTTTTAGGGAGGAACGTGAGTGAACCTCCCTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GCCTTCTTTAACTGTTTCTCTTAACCAAAAACTTTAAATGTTTTTGTGATTAATTGTGAGTATATGGTAGTGAAAGAGAAGCTTTACACGGTTAAGCAGG
CGAGCGAAATCCTCGGAGTTCATCCAAAAACAATCCAAAAATGGGATAAGGAAGGGAAAATCAAAACCATTAGAACACCCGGCGGGCGAAGGAGAATACC
AGAAAGCGAAATAAAAAGACTTCTCGGCATAAGCGAAGAAAAAGGCCTAATCATTGGCTATGCGAGAGTCTCAAGCCACACACAAAAAGACGACTTGGAA
AGACAGGTTGAAGCTATCAAGCAATACGCAAAAGAACGAGGCTGGCAAGTCCAAATACTCAAAGACATCGGTTCAGGATTGAACGAGAAGAGGAAAAATT
ATCGCAAGCTCCTCGAACTCGTCGCAAAAGGAGAAGTCTCAAAAGTCATCATCACACATCCAGATAGGCTCACCCGCTTTGGCTTCAAAACTCTCGAATT
CTTCTTCAAGGAAAACGGTTCAGAGATAATCGTAATCAACGAGAAAGAAAAACCCCCACGAGAAGAACTCATTGAAGACTTGATAACCATAATCTCGCAC
TTCGCTGGAAAGCTCTACGGAATGCGTTCTCACAAATACAAAAAGCTCAAGAAGGGCATGAAAAAACTAATCGAGGAGGTCGAGAATGACTAAACTTGTT
CTCACATACAGAATGTCGCACAACTGGAACGTTAATTCGTTCCTAAAAGAATACCAAAGACTTCTCCAGAGGGCAATTGATGAAATATCGGAGAACACGA
CTTGGAGAGAGAAGAAAGTCACGCACAGGTATTCCGTTGGAAGCAGGAATTATCACTACTATGAGACGACCCGCCTAATCCCGTATTTTCCACAGTCGAA
TGAGTTTAAGCGAGAATTAAGGAACAAACTCCTCAAGGACTGGCCTTTCGCCAAGCACTACATTGATTCTGCTATAAAGACCGCTTATTCAATCCTCAAA
AGCTGGAGAGGGAACTACCTCAAAGGGAAGAGAAAAAGAGCGAAGCCAGTCGTTAAGAGAAAGTTCGTGAGGGTGAAAACAACTCTAATGAAGGTTGAAG
GCTCAAGGATACGAATCACAGTTAAGCCTCGTGAGGAATACCTCGAGCTGGACTTCTCAAAGGAGTGGTTCTATGAAAGGGTTAAGGACTGGAAGGTCGG
TGAACTAATAATCAGGGAGAACGACGTTCTACTAACGTTCTCAAAAGAAGTCGAGTTCTCTGGAAGAATCAAAATCGGTATTGATAGTAACTTAACGAGC
CTCGATATTTTTCACCCTGAAAAAGGCTGGATTAGAGTGGACTTGAGCGAGCTACACAGGATTGCCGAGACTTATGACAGGATTATTGACGGGCTGAAGA
GCGTTCAGCGGAAAGCTCCAAAGAGGATTGGAGTTCTCCTTAAAAAATACTGGACGAGGAGAAGGAACAGGATTGAGGATTATTTGAACAAGCTTGCAGT
CCAGCTTTCAAGAGAGTTCCCTGATGCAGTTTTTGTCTTCGAGGATTTAAACAAGTTCAAAATGCTCCAGAACGGTTCGAGGAAGTTCAACAGGAAGCTC
TCCCGTGCTACTTGGAAGAAAATCGTTGGAAAGCTTTCCTATCGTGTTCCTGTCGAGTTTGTTAATCCTGCTTACACTTCGTCCACCTGCCCGGTGTGTG
GGAGTTGGTTGGAGTCCCGAAACGGGCGGGTGGTTTGTCATAACTGTGGTTTTGAGGCTGACAGGCAGTTTGTTGGTTCGTTCAACGTTTTCGTGCGGGG
ACTTGGGGTCGCCCTGAGCGGGGCTGAGCTTGATGATTTGCTCCCCAATGAACCCAGAGGGGAACTGAACGTGATGAAGCCCAAGTCCGTCGTGAGGGTT
GATTTAAATGGAGGGAGGTTCACTCACGTTCCTCCCTAAAACTCACGACGGACAGACCCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
630 bp209 aa64693+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MVVKEKLYTVKQASEILGVHPKTIQKWDKEGKIKTIRTPGGRRRIPESEIKRLLGISEEKGLIIGYARVSSHTQKDDLERQVEAIKQYAKERGWQVQILK
DIGSGLNEKRKNYRKLLELVAKGEVSKVIITHPDRLTRFGFKTLEFFFKENGSEIIVINEKEKPPREELIEDLITIISHFAGKLYGMRSHKYKKLKKGMK
KLIEEVEND

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1254 bp417 aa6861939+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTKLVLTYRMSHNWNVNSFLKEYQRLLQRAIDEISENTTWREKKVTHRYSVGSRNYHYYETTRLIPYFPQSNEFKRELRNKLLKDWPFAKHYIDSAIKTA
YSILKSWRGNYLKGKRKRAKPVVKRKFVRVKTTLMKVEGSRIRITVKPREEYLELDFSKEWFYERVKDWKVGELIIRENDVLLTFSKEVEFSGRIKIGID
SNLTSLDIFHPEKGWIRVDLSELHRIAETYDRIIDGLKSVQRKAPKRIGVLLKKYWTRRRNRIEDYLNKLAVQLSREFPDAVFVFEDLNKFKMLQNGSRK
FNRKLSRATWKKIVGKLSYRVPVEFVNPAYTSSTCPVCGSWLESRNGRVVCHNCGFEADRQFVGSFNVFVRGLGVALSGAELDDLLPNEPRGELNVMKPK
SVVRVDLNGGRFTHVPP

 

Blast result :
Comments
ISTko1 is 50% (ORF A) and 69% (ORF B) aa similar to IS1921.
References
1] Fukui,T., Atomi,H., Kanai,T., Matsumi,R., Fujiwara,S. and Imanaka,T. (2005) Genome Res. 15 (3), 352-363