ISSto6

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1246 bp

Ends


Left end : CCTATATAGGTTTTAATAGCCGGGGAGAGTAATACTCCTCGGCTGGGGAAACATGGTCGATCTCCTATCTGAAGCAAAGTCTTCGTACGAGGGCGTGACA
Right end : ATCGCCACGTGGGTCTAGAGGGCCCACGTGGCAATCTTAGCTAGTACTATGCTTGAAATATGACCGAAAGATTTATTACTGAACGCCCCCATTTTTGTAA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTATATAGGTTTTAATAGCCGGGGAGAGTAATACTCCTCGGCTGGGGAAACATGGTCGATCTCCTATCTGAAGCAAAGTCTTCGTACGAGGGCGTGACA
AACCCCTACCATCGGACTGAACATTGTGGAAAAATCCACGAATATAGGTGTGGTAAAGAGGTAGGGGTATTAGGAATAGATGTATCAAAAGATTATCTAA
TTACAAGTAGGGGGAGGGAAAGAAAATACAAGAACAACTTGAAGGGTTACGAGGAAATCCTCGAAATGAAGCCTTGCCTAATAGTCCTAGAACCTACGGG
AGTATACGCAATAAGGCCTAGCCAGTACTTCAAGGAGAAGGGTGTAAAAGTACTACAAGTAAGCCCAAACGTGTTATCAAGAGAAAAGGAGTTTAGGGGG
AAGAAAACAGATTTTTATGATGCTGAAAAATTAGAAAACATGGTTGACAAGGCTAAGGAATACGAGTACAACCCCTTGAGGGAACTGGTAACACTTTACC
TCTTCCTCAAGGATATAGAAGTAAAGTACAAGAACAGGCTGAAGAGGACATTATTCTTAGTAAGTGATAATGACAAGATAAGTAAGGAAAGGTTAGAAAA
GCTCGCAAATGGAGATTTTGCGCAAGAAGAACTATATCAACTAGAATATACACCAATAGTACTTGAGGAAATTAGAGTATTGGCAAAAACACTCTTGGAA
ACACAAGAGAGGTTAAAAGAAGTTAAGAAAATGATTGAGGAGCAAGTTCCCGAGAACCACGTTTTGTTAACGATCCCGGGGATTGGGAGGCTTGCAGCTG
GTATAATTATTGGTGTTGTTGGTGATGTTAAGCGCTTTCCTAAGCCTGAGTCTTTTGTGGCTTATTGTGGTTTAGATCCCGTTGTGGAGAGGAGTGGTAG
GAGTGTGATAAGTAGGGGGATTTCGAAGAGGGGTAATAAGTATTTGCGTAGCTTATTCTACTTTTTGGCTGAGATGAATTATTCTAGGAATCCAACATTG
TTGAAGTTTTATGAGTCTCATAAGGATAGGTTGCAAGGTAAGAAGTTGTATACTGCTTTGGCAAGGAAATTAGCTAGGATTGTATGGAGTGTTTGGTATA
ATAATAAGCCTTATGAGCCAAAGTGATTAAAGGTCCCTTCCCCTTAATCGCCACGTGGGTCTAGAGGGCCCACGTGGCAATCTTAGCTAGTACTATGCTT
GAAATATGACCGAAAGATTTATTACTGAACGCCCCCATTTTTGTAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1074 bp357 aa531126+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MVDLLSEAKSSYEGVTNPYHRTEHCGKIHEYRCGKEVGVLGIDVSKDYLITSRGRERKYKNNLKGYEEILEMKPCLIVLEPTGVYAIRPSQYFKEKGVKV
LQVSPNVLSREKEFRGKKTDFYDAEKLENMVDKAKEYEYNPLRELVTLYLFLKDIEVKYKNRLKRTLFLVSDNDKISKERLEKLANGDFAQEELYQLEYT
PIVLEEIRVLAKTLLETQERLKEVKKMIEEQVPENHVLLTIPGIGRLAAGIIIGVVGDVKRFPKPESFVAYCGLDPVVERSGRSVISRGISKRGNKYLRS
LFYFLAEMNYSRNPTLLKFYESHKDRLQGKKLYTALARKLARIVWSVWYNNKPYEPK

 

Blast result :
Comments
ISSto6 is 62% aa similar to ISC1190.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140