ISSto4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii |
DNA section
IS Length : 1484 bp
Ends
Left end : CTCCCACGGGGGATTCTCGTAAATCAAGTGAACGGATAAAACCAAGTATTACGAGAGTAAAATAAATAAGCAAGTAAGGAGAAAAACACCATAAGCCCAA
Right end : ACCCAAGGGTGGGGAAGTTAATGTCAAGGATTTCGACGTGGGAGACGCACTGGACTCGTTATCCCCGTAGGTTTGTTAGAGGCGGTAGCGTGTAGTGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CTCCCACGGGGGATTCTCGTAAATCAAGTGAACGGATAAAACCAAGTATTACGAGAGTAAAATAAATAAGCAAGTAAGGAGAAAAACACCATAAGCCCAA
CCACACTAAGGGGTTAAAACCCCATCATAAGGCTGGCTGTGAAGCCCCTAGAACGATCTAACAAGAGGGGTTAAAACCCCGAGTGGGAGGATGTAACAAA
TTACCCTAGGGGCTGAATATAGTTAACATTATGTAAAGAAAACACGGTATTATGAACACAAAAAATATCTTGTAAAACGAGAAATATTCAAACATGACAA
AGGACTTTGTAAGCAAAGCCTTCGCAATAGACATCTCACAAAGCAAACTAACAGCAGCAAAGGGAGAACTAGTTATAAAACAAGAAAAACCATCAGTAAC
AGTCAAGGAAGTAAAAGAATTCCCTTACAACAACGAGGGAATAGAAGAGTTAATAAAATTCCTTGAGGGATACAACGAGGGAATATTAGAGGCAACAGGA
GTATACTTCTACTACCTACACGAAAAACTAACAGAAAAAGGATTCAAAGTAACAGTAGTAAACCCAGCACACTTGACAGAAATACTAGGAAAAAAGACAG
ACAAACTAGACGCACAAAGACTACTAGTAGCATACATGACCGGAGTAATAAAAGGATCATACATACCAACGGGAGAAATAAAAGAACTAAGAGAGTTAAC
AAGACATAGGGAAAACCTAGTAAACAAGATAACACAAGTAAAAAACGAGATAAGAAAAACCTTGGAAATTGCCGGGTATAAAATAGAACCATTCGACAAA
AAAGGAAGACAACTACTAGAAAAACTAGCAAAAGGAGAAGAATTGAGCAAGGAAGAGAAGGAAGAGTTAAAAGAGAAACTAGGGAGAAACTTGAATGACG
CAGAAAAACTAACACTAAAACAACTAGTTGAGTTATTGAAAAGCTTGGAGAACATGGTTAAGGAAGTTGAGGACATGATAATATCCAAGATACCAAAACC
GGTAATAGAGTTATCCAAGATCCCTGGAATTGGTTTAATCACTGCAGCAACAATTTATGCTGAATTTGGTGATATCTCACGTTTTCCAAACTCAAAGGCA
GCTAGGGCTTATGCGGGTTTCGCACCTAGAACAAAGCAGAGTGGTAATAGTGAGTCCCACTCTGGTATGATTAGGGGTAATAAGCGCTTACGTAGGGGTT
TCTACTTAGCTGCTAGGAGTGCCAGATGGCTTGAACCATTTAACGAGTTTTACGAGAGGCTCATTGCTAGGGGTAAGAGTGTAAGGCAAGCTACATGTGC
ACTTGCGGGGAAGCTTGCTTGCATAGTATATCACGTTTTAAAGGACGGTGTTTACAAGGGCATAGTCAAGAAGCGTCTTAGGATACCCAAGGGTGGGGAA
GTTAATGTCAAGGATTTCGACGTGGGAGACGCACTGGACTCGTTATCCCCGTAGGTTTGTTAGAGGCGGTAGCGTGTAGTGCCT
CCACACTAAGGGGTTAAAACCCCATCATAAGGCTGGCTGTGAAGCCCCTAGAACGATCTAACAAGAGGGGTTAAAACCCCGAGTGGGAGGATGTAACAAA
TTACCCTAGGGGCTGAATATAGTTAACATTATGTAAAGAAAACACGGTATTATGAACACAAAAAATATCTTGTAAAACGAGAAATATTCAAACATGACAA
AGGACTTTGTAAGCAAAGCCTTCGCAATAGACATCTCACAAAGCAAACTAACAGCAGCAAAGGGAGAACTAGTTATAAAACAAGAAAAACCATCAGTAAC
AGTCAAGGAAGTAAAAGAATTCCCTTACAACAACGAGGGAATAGAAGAGTTAATAAAATTCCTTGAGGGATACAACGAGGGAATATTAGAGGCAACAGGA
GTATACTTCTACTACCTACACGAAAAACTAACAGAAAAAGGATTCAAAGTAACAGTAGTAAACCCAGCACACTTGACAGAAATACTAGGAAAAAAGACAG
ACAAACTAGACGCACAAAGACTACTAGTAGCATACATGACCGGAGTAATAAAAGGATCATACATACCAACGGGAGAAATAAAAGAACTAAGAGAGTTAAC
AAGACATAGGGAAAACCTAGTAAACAAGATAACACAAGTAAAAAACGAGATAAGAAAAACCTTGGAAATTGCCGGGTATAAAATAGAACCATTCGACAAA
AAAGGAAGACAACTACTAGAAAAACTAGCAAAAGGAGAAGAATTGAGCAAGGAAGAGAAGGAAGAGTTAAAAGAGAAACTAGGGAGAAACTTGAATGACG
CAGAAAAACTAACACTAAAACAACTAGTTGAGTTATTGAAAAGCTTGGAGAACATGGTTAAGGAAGTTGAGGACATGATAATATCCAAGATACCAAAACC
GGTAATAGAGTTATCCAAGATCCCTGGAATTGGTTTAATCACTGCAGCAACAATTTATGCTGAATTTGGTGATATCTCACGTTTTCCAAACTCAAAGGCA
GCTAGGGCTTATGCGGGTTTCGCACCTAGAACAAAGCAGAGTGGTAATAGTGAGTCCCACTCTGGTATGATTAGGGGTAATAAGCGCTTACGTAGGGGTT
TCTACTTAGCTGCTAGGAGTGCCAGATGGCTTGAACCATTTAACGAGTTTTACGAGAGGCTCATTGCTAGGGGTAAGAGTGTAAGGCAAGCTACATGTGC
ACTTGCGGGGAAGCTTGCTTGCATAGTATATCACGTTTTAAAGGACGGTGTTTACAAGGGCATAGTCAAGAAGCGTCTTAGGATACCCAAGGGTGGGGAA
GTTAATGTCAAGGATTTCGACGTGGGAGACGCACTGGACTCGTTATCCCCGTAGGTTTGTTAGAGGCGGTAGCGTGTAGTGCCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1161 bp | 386 aa | 294 | 1454 | + | No |
Chemistry : DEDD
ORF sequence :
MTKDFVSKAFAIDISQSKLTAAKGELVIKQEKPSVTVKEVKEFPYNNEGIEELIKFLEGYNEGILEATGVYFYYLHEKLTEKGFKVTVVNPAHLTEILGK
KTDKLDAQRLLVAYMTGVIKGSYIPTGEIKELRELTRHRENLVNKITQVKNEIRKTLEIAGYKIEPFDKKGRQLLEKLAKGEELSKEEKEELKEKLGRNL
NDAEKLTLKQLVELLKSLENMVKEVEDMIISKIPKPVIELSKIPGIGLITAATIYAEFGDISRFPNSKAARAYAGFAPRTKQSGNSESHSGMIRGNKRLR
RGFYLAARSARWLEPFNEFYERLIARGKSVRQATCALAGKLACIVYHVLKDGVYKGIVKKRLRIPKGGEVNVKDFDVGDALDSLSP
KTDKLDAQRLLVAYMTGVIKGSYIPTGEIKELRELTRHRENLVNKITQVKNEIRKTLEIAGYKIEPFDKKGRQLLEKLAKGEELSKEEKEELKEKLGRNL
NDAEKLTLKQLVELLKSLENMVKEVEDMIISKIPKPVIELSKIPGIGLITAATIYAEFGDISRFPNSKAARAYAGFAPRTKQSGNSESHSGMIRGNKRLR
RGFYLAARSARWLEPFNEFYERLIARGKSVRQATCALAGKLACIVYHVLKDGVYKGIVKKRLRIPKGGEVNVKDFDVGDALDSLSP
Blast result :
Comments
ISSto4 is 51% ISGka2.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140