ISSto4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1484 bp

Ends


Left end : CTCCCACGGGGGATTCTCGTAAATCAAGTGAACGGATAAAACCAAGTATTACGAGAGTAAAATAAATAAGCAAGTAAGGAGAAAAACACCATAAGCCCAA
Right end : ACCCAAGGGTGGGGAAGTTAATGTCAAGGATTTCGACGTGGGAGACGCACTGGACTCGTTATCCCCGTAGGTTTGTTAGAGGCGGTAGCGTGTAGTGCCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTCCCACGGGGGATTCTCGTAAATCAAGTGAACGGATAAAACCAAGTATTACGAGAGTAAAATAAATAAGCAAGTAAGGAGAAAAACACCATAAGCCCAA
CCACACTAAGGGGTTAAAACCCCATCATAAGGCTGGCTGTGAAGCCCCTAGAACGATCTAACAAGAGGGGTTAAAACCCCGAGTGGGAGGATGTAACAAA
TTACCCTAGGGGCTGAATATAGTTAACATTATGTAAAGAAAACACGGTATTATGAACACAAAAAATATCTTGTAAAACGAGAAATATTCAAACATGACAA
AGGACTTTGTAAGCAAAGCCTTCGCAATAGACATCTCACAAAGCAAACTAACAGCAGCAAAGGGAGAACTAGTTATAAAACAAGAAAAACCATCAGTAAC
AGTCAAGGAAGTAAAAGAATTCCCTTACAACAACGAGGGAATAGAAGAGTTAATAAAATTCCTTGAGGGATACAACGAGGGAATATTAGAGGCAACAGGA
GTATACTTCTACTACCTACACGAAAAACTAACAGAAAAAGGATTCAAAGTAACAGTAGTAAACCCAGCACACTTGACAGAAATACTAGGAAAAAAGACAG
ACAAACTAGACGCACAAAGACTACTAGTAGCATACATGACCGGAGTAATAAAAGGATCATACATACCAACGGGAGAAATAAAAGAACTAAGAGAGTTAAC
AAGACATAGGGAAAACCTAGTAAACAAGATAACACAAGTAAAAAACGAGATAAGAAAAACCTTGGAAATTGCCGGGTATAAAATAGAACCATTCGACAAA
AAAGGAAGACAACTACTAGAAAAACTAGCAAAAGGAGAAGAATTGAGCAAGGAAGAGAAGGAAGAGTTAAAAGAGAAACTAGGGAGAAACTTGAATGACG
CAGAAAAACTAACACTAAAACAACTAGTTGAGTTATTGAAAAGCTTGGAGAACATGGTTAAGGAAGTTGAGGACATGATAATATCCAAGATACCAAAACC
GGTAATAGAGTTATCCAAGATCCCTGGAATTGGTTTAATCACTGCAGCAACAATTTATGCTGAATTTGGTGATATCTCACGTTTTCCAAACTCAAAGGCA
GCTAGGGCTTATGCGGGTTTCGCACCTAGAACAAAGCAGAGTGGTAATAGTGAGTCCCACTCTGGTATGATTAGGGGTAATAAGCGCTTACGTAGGGGTT
TCTACTTAGCTGCTAGGAGTGCCAGATGGCTTGAACCATTTAACGAGTTTTACGAGAGGCTCATTGCTAGGGGTAAGAGTGTAAGGCAAGCTACATGTGC
ACTTGCGGGGAAGCTTGCTTGCATAGTATATCACGTTTTAAAGGACGGTGTTTACAAGGGCATAGTCAAGAAGCGTCTTAGGATACCCAAGGGTGGGGAA
GTTAATGTCAAGGATTTCGACGTGGGAGACGCACTGGACTCGTTATCCCCGTAGGTTTGTTAGAGGCGGTAGCGTGTAGTGCCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa2941454+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTKDFVSKAFAIDISQSKLTAAKGELVIKQEKPSVTVKEVKEFPYNNEGIEELIKFLEGYNEGILEATGVYFYYLHEKLTEKGFKVTVVNPAHLTEILGK
KTDKLDAQRLLVAYMTGVIKGSYIPTGEIKELRELTRHRENLVNKITQVKNEIRKTLEIAGYKIEPFDKKGRQLLEKLAKGEELSKEEKEELKEKLGRNL
NDAEKLTLKQLVELLKSLENMVKEVEDMIISKIPKPVIELSKIPGIGLITAATIYAEFGDISRFPNSKAARAYAGFAPRTKQSGNSESHSGMIRGNKRLR
RGFYLAARSARWLEPFNEFYERLIARGKSVRQATCALAGKLACIVYHVLKDGVYKGIVKKRLRIPKGGEVNVKDFDVGDALDSLSP

 

Blast result :
Comments
ISSto4 is 51% ISGka2.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140