ISSto3

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1317 bp

Ends


IR Length : 24/26

IRL : GAGAGCGTCCAATGTGTAATTAACGTAATTTACTTTATTAATAAATTTTT
IRR : GAGAGCGTCCAACGCGTAATTAACGTGAATAACTAAATAAAGTAAAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACACCTAGGTTATACGT/AGAGATATATAAT6

DNA sequence

GAGAGCGTCCAATGTGTAATTAACGTAATTTACTTTATTAATAAATTTTTATAGAAAAAGCAAGAATTACAGAACCCAATTGGATAATAATACTTAAGGG
GGATTACGCCTAGGTTATACAATGGGCATCGAAATTTACCAAAGCGTAATCCCCCAAAAATATTTGGGTTGGAAGAGTAAATATCTTTTGGATTGCGAGG
AGATCTTGAAAGAGCTAGATGATGTGATCAGAAGGGAGTTCGAGGGTTTCAAGTTCACTCAATATGACCCCTTGACTTACTTGAAGATGCTGATTGTTAT
GGTACTCTATAGAGAGTCTTATAGGGGGACAATTGAACTCGCAGCTACAAATATTGTGGTAAAGCGTTTCCTCAAAGTTAAAGAAATCCCATCAAAGTCC
TCACTACACTGGTTTGTCCACAAGTTTAGTGACAGAATAAGGGATTTACTCCTCAAGGTATTCAGAAGATTTGAATCACTCGTTGAAGAAGAACAACTCC
CAACACACCATCTACTAGCAGAGGAGAAGTTTGGAAGGGATATAAGGTTGCTTGATAGTTTTCCCGTTGAGTTGCCTAATGGTAAGAAGAGTATTGAGAC
TCATATTGAGAAGTTATTGCTTGATTTGAGGGAGATTGATTCTAAGAGGAAGCCTCATGAGGTTCTTGCTTCACTTGATGAGGGAAAGAGGGAGGAGCTT
TTTTCTCATTTCCCTAGGGATTATACTGTTAGGGAGCATGAGGGGAGTTGGGGTAGGAAGTGGGGTAAGGCTTGGTTTGGGGGGAAGTGTTTTGCTGAGG
TTTCTTCTAAAACCCTTATGGTATCTAAGGTTGAGTTAGTTTTAGCTAATGTTTCTGACTCGAGGTCTCCTATTGTGCCTAATGTGGTTACGCTTGTGGA
TAGGGGGTTTGTGGAGAGGGGTAAGGTAATTAGGGCTAGAAAGGGTTTGGGAGTTTTGAGGAGTGGTGTTGAGTTTTTTGGGATTTTCCTCAAGGAGCAC
ATGAGGTGTTTTGCTAGGAGTTTAGAGGTGTTGAATACTTTTGCTAATCTCGTAGGTTTAGCTTATAATATTCAGCGGTTTAGGGCTCTTAGGAAAAGGC
GTGTCCTACACTAGAAAAACTCGGTGGGAAAGCATGTTAGAAAAGTTCTCTCAGCTTGGGTTATCGAAAATTGCGAGATTATTTGCAATTGCATTTAATA
AACTGATTTTATATTATCTCACTCGTAGTAATTAAGTGAATTTAATTCTAAGCAAACGTGTTTTATAACTTTTTACTTTATTTAGTTATTCACGTTAATT
ACGCGTTGGACGCTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa1221114+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGIEIYQSVIPQKYLGWKSKYLLDCEEILKELDDVIRREFEGFKFTQYDPLTYLKMLIVMVLYRESYRGTIELAATNIVVKRFLKVKEIPSKSSLHWFVH
KFSDRIRDLLLKVFRRFESLVEEEQLPTHHLLAEEKFGRDIRLLDSFPVELPNGKKSIETHIEKLLLDLREIDSKRKPHEVLASLDEGKREELFSHFPRD
YTVREHEGSWGRKWGKAWFGGKCFAEVSSKTLMVSKVELVLANVSDSRSPIVPNVVTLVDRGFVERGKVIRARKGLGVLRSGVEFFGIFLKEHMRCFARS
LEVLNTFANLVGLAYNIQRFRALRKRRVLH

 

Blast result :
Comments
ISSto3 is 37% aa similar to IS1194.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140