ISMbu9

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007955 ND Methanococcoides burtonii
Methanococcoides burtonii DSM 6242
DNA section
IS Length : 1281 bp

Ends


oriIS : TTGTATATAATCTATAACTTTTCGTACCTATAAGCAATATTTATATTATGGTCTAAGCCAATTCATTTCATATTGCAAACTACTACTTATGCATCCAATC II struct. : No
terIS : TGGGGAAATTGCGGAAGTTAATGGCAATATAAATGATCGGGGTATAGTGATGGGGTAGTCGTACCTACAATAAATTTGCACCCGAAGGGTGCTTTCTTGT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

TTGTATATAATCTATAACTTTTCGTACCTATAAGCAATATTTATATTATGGTCTAAGCCAATTCATTTCATATTGCAAACTACTACTTATGCATCCAATC
AGCTTCTTACTGTCAAACGTATCTTCAAAGACAATAATAACTGGGATCAATTTTGCATTGACCATGAAGACATTCTTCGCAATGTTGAGATTGAAGAAGT
CAACAAGATGTTATCTTGTAAAGATAAGAGTCGTGGTTTCTTCACTTATCAATGTGAAAGTTGTGGTAATTACAAAACGGTCTATTTTGGATGTAACAGT
TGTATCTGCACAAATTGTGGTCTAAATCATACTGAAAAATGGTCTAAATCTCTCAAACGTGCAATGTTCAATGTAGTTCATAGGCATGCTGTTCTTACAA
TCCCGGATCTTCTGTGGGGTTTTGTTAGAAAGAATCGTTTTCTACTAAAGGTTTTGATGGATGCAGCAATTGTAGCAATTAATGACACTATTTCATTCAA
GCACAGGAATGATCGTTTGCTTGCGGGTGCTATTGTCGTTCTACATCCATTTTCCAAAGATATGGGTTTTAATCCTCATCTTCATATTCTTCTAACTGAA
GGTAGATTTGATATGTATGGTAAATTCATTCACCAAAAGTTCATTCATTTTAAGACCATGCGAAAAACATGGCAATACCAAGTGCTTACGAGATTCAAAG
ATGCCCTCTCTAAGGTTCAAGCATTCTCCCATCTTGTAAATCAACTTTTTAAAGAATATCCTGATGGATTTTATGTTCATATGCCAAAAAACTCAAGAAT
CACTAACAAACAAAGGATGGCGCAGTATGTCGGCAGGTATATCAGGCATCCAGCTATCGCAAATTCAAGGTTGTATAGTTATGATGGAAAATCCGTTACT
TTTTGGTATAATGATCATGAAGGAGTAAGGCATTTTGTGACAATGGAATTGCAGGAATTTATTAGAGCGTTAATTCAGCATATTCCTGATCGAAATTTTA
AAATGATACGGTATTATGGTGCATATAGTCGCAAAGTCAAAAAGAGATATTCAAAGTGCTTACAGAGAAGTATAAAGCAGACAAATCTCAAAGACTTCAA
AAAAGTGTTGAATAAGTGGGCGCCACAGTGTTCATTTTGTGGTGGCAAAATGAAGTTTGTTTGGTATGAGAAAAGACCACCTGGGGAAATTGCGGAAGTT
AATGGCAATATAAATGATCGGGGTATAGTGATGGGGTAGTCGTACCTACAATAAATTTGCACCCGAAGGGTGCTTTCTTGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa731239+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MQTTTYASNQLLTVKRIFKDNNNWDQFCIDHEDILRNVEIEEVNKMLSCKDKSRGFFTYQCESCGNYKTVYFGCNSCICTNCGLNHTEKWSKSLKRAMFN
VVHRHAVLTIPDLLWGFVRKNRFLLKVLMDAAIVAINDTISFKHRNDRLLAGAIVVLHPFSKDMGFNPHLHILLTEGRFDMYGKFIHQKFIHFKTMRKTW
QYQVLTRFKDALSKVQAFSHLVNQLFKEYPDGFYVHMPKNSRITNKQRMAQYVGRYIRHPAIANSRLYSYDGKSVTFWYNDHEGVRHFVTMELQEFIRAL
IQHIPDRNFKMIRYYGAYSRKVKKRYSKCLQRSIKQTNLKDFKKVLNKWAPQCSFCGGKMKFVWYEKRPPGEIAEVNGNINDRGIVMG

 

Blast result :
Comments
ISmbu9 is 49% aa similar to IS1294.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission Genbank.