ISfinder Mirror Site

ISMbu8

Family ISH3
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_007955	ND	Methanococcoides burtonii	Methanococcoides burtonii

DNA section

IS Length : 1247 bp

Ends

IR Length : 13/17

IRL : CAGTAGTTCTCTAATTTTTGCTTAACCCCATAAATCCACATCAAACGGCA
IRR : CAGTACTTCACTAATATATTCTCCGTCATATAATATCTCCACATTCACCT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GGTATAACTTATTCT	AA/TATT	ATCAGCATCTCCCTTCCT	7

DNA sequence

CAGTAGTTCTCTAATTTTTGCTTAACCCCATAAATCCACATCAAACGGCACATTTATATACGGTTAAAAATTCCCCTCCATGTTACGTCGACTAGAACTA
ACTCCAACCCACTCATCAAAACTGTTTTACAGCCTCTTCTCGACAATATACATATTCCAATCAATGGTTCTCTCAATTGCAAAGATCTATTTGCCAGTGT
TCTTGGCATGGCAACATGGAATCGTTCAATTCATTCAATTCATAAACAGTATCATAAGATTCCTTGTGAAACATCAATGAGATTCCATTTACAAAAAACC
GAGTTGGATCAACTCATTGAACACAATACAAAAATACTCTTACAATCATCACTTGAAACTCTCAAACAAAAGAAAAAGCACGACTTTGCTATTGATTATA
CGAATGATCAATACTATGGAAGCATAGATGATAGCAATAATAGATATGTGATTAGAGGTCAAGCCAAAAAATCAACGAACTCATTCTATTCTTACATCTC
GCTTTGCATTATTGACAAAGATGAAAGGGTAACAATTTCTGTGCTTCCTGTGGAAAAAGGAAACTCTAAGACAGATTATCTCAAATATTTTATAGACCAA
ATCAAACAGATTAAACTCAAGATCAATGTTCTTTGTTTGAATAGGGAATTCTATTCAAGAGATGTTTTTTCTTTTTTACAGGAAAATGAAGTTGCACATA
TTGTTCCTGTTGTTAAAATGGGAAAAAGGTTAAAAGAAATTATTGATGGAACTAAAAAGCGTTGTGACACATATACGATGAATAGCACAAAAGGAAAAGT
GGAGCTTGTCCTTGCTATTGATGTCAAATACAGGAAAGGGAAGCGAGGAAAGAATGGATGTGAGAACCTTGGATTTGTTGTTTATGGGATTGATTGGGAT
CCAAGAAAAGTCAGTGACACTTACAGGAAAAAGTTTGCTATAGAATCGTCTTATAGGATGCGAAATGTGGTAAATCATAAAACGTGTTCTAAAGACTCTA
TGTTAAGATATTTTTATGCGCTGATATCGTTTCTTTTCAAAAATGCATGGGTGTCAATACAGAGAATGCATTTCATAAAAGTGAAAAGAGGACCAAAGAC
GATTGAATCTGATATGTTTAGGTTTGATATGTTTGTTCATTTAATTGTGGAATGGGTGAGAAGAAAGTTGAAAGTTAGGTTAATTGTTAAGTGTTTTAGG
TGAATGTGGAGATATTATATGACGGAGAATATATTAGTGAAGTACTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
996 bp	331 aa	208	1203	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MATWNRSIHSIHKQYHKIPCETSMRFHLQKTELDQLIEHNTKILLQSSLETLKQKKKHDFAIDYTNDQYYGSIDDSNNRYVIRGQAKKSTNSFYSYISLC
IIDKDERVTISVLPVEKGNSKTDYLKYFIDQIKQIKLKINVLCLNREFYSRDVFSFLQENEVAHIVPVVKMGKRLKEIIDGTKKRCDTYTMNSTKGKVEL
VLAIDVKYRKGKRGKNGCENLGFVVYGIDWDPRKVSDTYRKKFAIESSYRMRNVVNHKTCSKDSMLRYFYALISFLFKNAWVSIQRMHFIKVKRGPKTIE
SDMFRFDMFVHLIVEWVRRKLKVRLIVKCFR

Blast result :

Comments

ISMbu8 is 84% aa similar to ISMBu7.

References

1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank.