ISMhu7
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1713 bp
Ends
IR Length : 16/17
IRL : CCGACACTCGGCAGCAACGAGTGTTACGAAACATAATTTTTGTACAAACA
IRR : CCGACACTCGGCACCAAAAAATTCACGCATAATATTTTTCAACATGCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTTTCCATGTATAT | TTACAG | CAGAGATATC | 6 |
DNA sequence
CCGACACTCGGCAGCAACGAGTGTTACGAAACATAATTTTTGTACAAACATTTAAATCTGAGTACGTTGTATACTCTTTTTGAATAATGTCCATCGTTGC
TGATTCAAATGTAACCATCGCTCACTTAGGCATAGTCTCAGGGATAATAGACAAACTTGGAATTTGTGAATATATCGATCGGCTCATTCCCAAAAAGCGT
AGCCATATTGTCACTCATGGCGAGGCAGTGAAAGCATTACTTCTCAATTGCCTGGGTTTTACTGAACGGCGTCTTTACCTGATGCCAGAATATTTTGATG
ATGTTGCAACTGAACGTCTAATTGGCGAGGGAATTGAAGCAAAGCATTTGAATCAGTACTTATTTGGTGAAACTCTTGATGCGATAGCCGCTGCAGGTCC
CACTGAGTTATTCACGGGTATCATCCTTGAAATCCTTGATAATCTTCTCCATGGAGTTCTTCGACTTCATTATGATACAACAACGATCAGTGTAACAGGA
GAGTATGATCAAGAACTAAATACTCGTCTGATTAAGCTGGTTCGAGGGCATTCAAAAGATCACCGCAATGATTTGAAACAGTTAGTCCTATGTTTAGTAA
CGGATCAACGTGGGATTCCTGTTTTTATGGAGCCTTTATCCGGTAATGCATCAGATAAAAAGACTTTAATTCGAACCATTCAGGAAGTGCGAAAGAATTT
CAATACAGACGAGAAGGTTTACCATATGGCCGATTCAGCCCTTTACGCCGCAAAAATGGTTCAAGATCTAGGTTCTCACTGTTACTGGATAACTCATGTT
CCTGAAACGATTAAGGAGGTAAAAACTATCCTCAAATCTGACGTTGAGTGGATTCCGTGTTCTGATGCCCGGTATAAGTATGCTGCTTTCGATAGCAACT
ATGGCGGTATCGATCAAAAATGGTTTTTATTCCACTCTGAAGAGAGACATAAAGCCAGCATCAAACATGATATTGAAAAAATTGAGGAGAAACTGGCGAA
AAGTCAGACTGCCCTGAATAAATCATTGGTCAACGGGTTTGCTTGCGAAAATGATGCACTTCTCGCTGTAGAAAGATGGATGTCAAAGCATAAGCGATAC
ATCCTTTCTGATATTGAAATAACATGTGATAACAAAAAACCGTCAGGTAAGGTTGGGAGACCGAAAAAAGGTGAGGTACTTGAGAAATGGTATTCTGTCT
CCTGCAAATTAGCGCTAAACCAGGAGGTTATTCAAAAAGAACAAGCAATGATGGGTCGGTTTATTCTCGCTAGCAATGACACTACTGTCGATCCGAACAC
CTGTCTTGAATATTATAAGGAACAAAATGCCGTTGAAAGAGGATTCAGGTTCATAAAGGGGAATTCTTTTCACGCATCAGAGGTTTATCTGGAGAATTCA
AATCGTGTTGCAGCCTTATCCATGATAATGGTTCTATGCCTTCTCGTGTATTCGTTCACAGAGTGGGTAGTTCGTGAGACATTGAAGATTGAGAAGAAAC
AAATCCGGGATCAAAAAGGAAAACCAACTCAGAGACCATCTGCAAAATGGTTGTTCTTCATGTTCAGAAGAGTAAGGCAGATTAAGGAAATTGATAATTC
CAGAATAATTGTGCGAATTCTAAATTTCACTGATGAATTAAGAGATATTGTTCGATTGATAGGGCCGCATGTTGAAAAATATTATGCGTGAATTTTTTGG
TGCCGAGTGTCGG
TGATTCAAATGTAACCATCGCTCACTTAGGCATAGTCTCAGGGATAATAGACAAACTTGGAATTTGTGAATATATCGATCGGCTCATTCCCAAAAAGCGT
AGCCATATTGTCACTCATGGCGAGGCAGTGAAAGCATTACTTCTCAATTGCCTGGGTTTTACTGAACGGCGTCTTTACCTGATGCCAGAATATTTTGATG
ATGTTGCAACTGAACGTCTAATTGGCGAGGGAATTGAAGCAAAGCATTTGAATCAGTACTTATTTGGTGAAACTCTTGATGCGATAGCCGCTGCAGGTCC
CACTGAGTTATTCACGGGTATCATCCTTGAAATCCTTGATAATCTTCTCCATGGAGTTCTTCGACTTCATTATGATACAACAACGATCAGTGTAACAGGA
GAGTATGATCAAGAACTAAATACTCGTCTGATTAAGCTGGTTCGAGGGCATTCAAAAGATCACCGCAATGATTTGAAACAGTTAGTCCTATGTTTAGTAA
CGGATCAACGTGGGATTCCTGTTTTTATGGAGCCTTTATCCGGTAATGCATCAGATAAAAAGACTTTAATTCGAACCATTCAGGAAGTGCGAAAGAATTT
CAATACAGACGAGAAGGTTTACCATATGGCCGATTCAGCCCTTTACGCCGCAAAAATGGTTCAAGATCTAGGTTCTCACTGTTACTGGATAACTCATGTT
CCTGAAACGATTAAGGAGGTAAAAACTATCCTCAAATCTGACGTTGAGTGGATTCCGTGTTCTGATGCCCGGTATAAGTATGCTGCTTTCGATAGCAACT
ATGGCGGTATCGATCAAAAATGGTTTTTATTCCACTCTGAAGAGAGACATAAAGCCAGCATCAAACATGATATTGAAAAAATTGAGGAGAAACTGGCGAA
AAGTCAGACTGCCCTGAATAAATCATTGGTCAACGGGTTTGCTTGCGAAAATGATGCACTTCTCGCTGTAGAAAGATGGATGTCAAAGCATAAGCGATAC
ATCCTTTCTGATATTGAAATAACATGTGATAACAAAAAACCGTCAGGTAAGGTTGGGAGACCGAAAAAAGGTGAGGTACTTGAGAAATGGTATTCTGTCT
CCTGCAAATTAGCGCTAAACCAGGAGGTTATTCAAAAAGAACAAGCAATGATGGGTCGGTTTATTCTCGCTAGCAATGACACTACTGTCGATCCGAACAC
CTGTCTTGAATATTATAAGGAACAAAATGCCGTTGAAAGAGGATTCAGGTTCATAAAGGGGAATTCTTTTCACGCATCAGAGGTTTATCTGGAGAATTCA
AATCGTGTTGCAGCCTTATCCATGATAATGGTTCTATGCCTTCTCGTGTATTCGTTCACAGAGTGGGTAGTTCGTGAGACATTGAAGATTGAGAAGAAAC
AAATCCGGGATCAAAAAGGAAAACCAACTCAGAGACCATCTGCAAAATGGTTGTTCTTCATGTTCAGAAGAGTAAGGCAGATTAAGGAAATTGATAATTC
CAGAATAATTGTGCGAATTCTAAATTTCACTGATGAATTAAGAGATATTGTTCGATTGATAGGGCCGCATGTTGAAAAATATTATGCGTGAATTTTTTGG
TGCCGAGTGTCGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1605 bp | 534 aa | 87 | 1691 | + | No |
Chemistry : DDE
ORF sequence :
MSIVADSNVTIAHLGIVSGIIDKLGICEYIDRLIPKKRSHIVTHGEAVKALLLNCLGFTERRLYLMPEYFDDVATERLIGEGIEAKHLNQYLFGETLDAI
AAAGPTELFTGIILEILDNLLHGVLRLHYDTTTISVTGEYDQELNTRLIKLVRGHSKDHRNDLKQLVLCLVTDQRGIPVFMEPLSGNASDKKTLIRTIQE
VRKNFNTDEKVYHMADSALYAAKMVQDLGSHCYWITHVPETIKEVKTILKSDVEWIPCSDARYKYAAFDSNYGGIDQKWFLFHSEERHKASIKHDIEKIE
EKLAKSQTALNKSLVNGFACENDALLAVERWMSKHKRYILSDIEITCDNKKPSGKVGRPKKGEVLEKWYSVSCKLALNQEVIQKEQAMMGRFILASNDTT
VDPNTCLEYYKEQNAVERGFRFIKGNSFHASEVYLENSNRVAALSMIMVLCLLVYSFTEWVVRETLKIEKKQIRDQKGKPTQRPSAKWLFFMFRRVRQIK
EIDNSRIIVRILNFTDELRDIVRLIGPHVEKYYA
AAAGPTELFTGIILEILDNLLHGVLRLHYDTTTISVTGEYDQELNTRLIKLVRGHSKDHRNDLKQLVLCLVTDQRGIPVFMEPLSGNASDKKTLIRTIQE
VRKNFNTDEKVYHMADSALYAAKMVQDLGSHCYWITHVPETIKEVKTILKSDVEWIPCSDARYKYAAFDSNYGGIDQKWFLFHSEERHKASIKHDIEKIE
EKLAKSQTALNKSLVNGFACENDALLAVERWMSKHKRYILSDIEITCDNKKPSGKVGRPKKGEVLEKWYSVSCKLALNQEVIQKEQAMMGRFILASNDTT
VDPNTCLEYYKEQNAVERGFRFIKGNSFHASEVYLENSNRVAALSMIMVLCLLVYSFTEWVVRETLKIEKKQIRDQKGKPTQRPSAKWLFFMFRRVRQIK
EIDNSRIIVRILNFTDELRDIVRLIGPHVEKYYA
Blast result :
Comments
ISMhu7 is 66% aa similar to ISMba11. There are 1 full and 3 partial copies in Methanospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.