ISMhu5

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007796 ND Methanospirillum hungatei
Methanospirillum hungatei JF-1
DNA section
IS Length : 1719 bp

Ends


IR Length : 18/21

IRL : CCCATATTCGTCAGATCTATTACAATTTTATATAATAGTAAACTATATAA
IRR : CCCACATTCGCCAGATCTTTTTTCAACTATAGAATTTTTCGTACTCCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAAATGATAATAAACATCAAAATC5

DNA sequence

CCCATATTCGTCAGATCTATTACAATTTTATATAATAGTAAACTATATAACTAAGAAGATCTCCATTACTATAATTAATGAAAGATGAGGATGTTTCATT
AGAAATAGACTCCATAAAAACCATTGATCATCTTGGAATCGTTGCAGGCACGTTCCATAAGCTTGGTTTAGCTCCTATAATTGACCGGGCAATCCCTAAA
ATCGGTCAACATCAAATATCAAGTTCTCAAATTTTATTAGCCCTCATTCTCAACGGACTTGGATTCACAGAGAGACGACTCTATCTTTTTCCCGAATACT
GCAAGCATCTTGATTTGGAACGTCTCATAGGTCCGGATATTTCTGCAAAAAATCTTAATGAATCAGTCATTGGTCGCCTTTTGGATAAGATATATGCATA
TGGCCCCAGCAAGCTCTTTACTGATCTTGTCACCCAGATGTTTACTGTTTACAAAGATGGAGTACAGCTTTGTCATGTTGATACAACCAATTTCAGTGTT
CATGGTGAATATGGAAATGAATCCGGAGATGGATGTATCAAAATTACAAAGGGACATCCAAAAGACAAACGCTGGGATTTAAACAGATTTGCCTTAAGTA
TGGTGGTTAACCAACACGGGATACCGATTTTTGCTCGTGCACACGATGGCAACGAATCAGATAAGGAAGTTCTTGTGCAAACAATCCTATCATTGCAAGA
TTCATTCACATTTGATCCTGATGTAATCTTCATGGGTGACAGTGCCCTGTATACTGATAAAAACATCAAAACCCTCGGTCCGGAAACAAGGTGGATATCA
AATGTCCCAGCCACAATAAATGAGATGACAGAGTTACTCAAATCTGATCTTCTCTTCACTCCTACCTCAGATCCACGGTATTCTTGCAGTAGCGTTGACT
CACATTATGGTGGTGTTCCTCAAAAATGGATTGTTGTCTCATCTGAAGAGATGAAAGCTCGAGAATTGAAGACGTTTGAGAAAAACCTCCCTGTGAGGTT
CAAAGCCGCATTAAAAGGGTTAAAACAGATTTCTAAAGTATGCTATGCATGTGAAACAGATGCCAGTAACGCTCTCTTACGCTATCTTAATGAAACACCT
TTAGTAAAATTGGTGGATTCAAGGATCAAGGTCAGTTATAAACGGGAAAATGGTAAGAAGGGGCGCCCAAAAGCAGGAGAAACGTTAATCCCACAATATT
CGATCGATGCAAGGGTTGAACTTGCTCAGGATTTCGTTGAAAGTGAAAAACAGTATCTGGGCAGATTTATTCTTGCAACGAATGTTTTGAGTTTGGATTC
TGAAACGGTTCTGAATCACTATAAAGGACAGATGCTTGTCGAAAAAGGTTTCCGGTTTTTAAAGGACAAATCATTCCGGGTTGCTGAAGTTTATCTGAAA
AGTGAAAAAAGGATCGAGGCTTTATGTATGGTTATGGTTCTCTGCCTCATGGTTTACTCATATACTGAAATGCTGCTGCGAAAAAGGCTGAAAGAAGAAG
ATGAAACGGTGTTGAATCAGAAGAAGAAACCTACCTCTCGTCCAACGCTCAAATGGATTTTTTTTAAATTCAGAGAGATTAAGTCATGTATTATTTCTGT
CGATGATGCACTCCATTCATCTATCCAGAATTTGGATCGAGAACTATTGAAGATATTGCGATTGCTTGGGCCGGAGTACGAAAAATTCTATAGTTGAAAA
AAGATCTGGCGAATGTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1620 bp539 aa781697+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKDEDVSLEIDSIKTIDHLGIVAGTFHKLGLAPIIDRAIPKIGQHQISSSQILLALILNGLGFTERRLYLFPEYCKHLDLERLIGPDISAKNLNESVIGR
LLDKIYAYGPSKLFTDLVTQMFTVYKDGVQLCHVDTTNFSVHGEYGNESGDGCIKITKGHPKDKRWDLNRFALSMVVNQHGIPIFARAHDGNESDKEVLV
QTILSLQDSFTFDPDVIFMGDSALYTDKNIKTLGPETRWISNVPATINEMTELLKSDLLFTPTSDPRYSCSSVDSHYGGVPQKWIVVSSEEMKARELKTF
EKNLPVRFKAALKGLKQISKVCYACETDASNALLRYLNETPLVKLVDSRIKVSYKRENGKKGRPKAGETLIPQYSIDARVELAQDFVESEKQYLGRFILA
TNVLSLDSETVLNHYKGQMLVEKGFRFLKDKSFRVAEVYLKSEKRIEALCMVMVLCLMVYSYTEMLLRKRLKEEDETVLNQKKKPTSRPTLKWIFFKFRE
IKSCIISVDDALHSSIQNLDRELLKILRLLGPEYEKFYS

 

Blast result :
Comments
ISMhu5 is 65% aa similar to ISMba11. There are 5 full copies in Methanospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.