ISMhu4
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1816 bp
Ends
IR Length : 19/22
IRL : CTTACCTTTCGCTGATCTTATAAGGTAAATGTTAAATTATAAAGCTTAAC
IRR : CTCACCGTTCGCTGATCTTAAATTCAGATTCCTGAATTGATCCCAATTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTACTGATCCGATAT | ATATA | GATAATGAAA | 5 |
DNA sequence
CTTACCTTTCGCTGATCTTATAAGGTAAATGTTAAATTATAAAGCTTAACTTTATATCTGAGAAGTGTACATATATATGGGATGATCGCTCCGACACATC
AAATTGAACACATCGGCGGAATCCCATATATCTTTGAAACATTAAAAGAACTTCAAATCATACGAATTTTGAATGAGGTATATTCGCCTCACAGAAACTG
GGTGGGTTTGCCGATTGGTGAAACGATTGCCATTTGGATCTGCTACTGCCTGACCGAAAATGATCATCGTATGTGTCCCTTGGAGAAGTGGGTTACTACC
AAAAAAAATTTACTGGAAAAATTGATTGGTTTTCAATTTAGTCCAAAATGCTTTACTGATGACCATTTGGCTCGTATATTATCTCTATTGCACAATAATG
AACTTTGGAACCGATTTGAATCTGAATTAAATCGTTCTACACTGCGTATATATGGTTTAACGGATGAAAACATCGTCCGTCTTGATATGACAACAGTAAA
CAGCAATGGAATTATCGATAAAAACGGATTAATACAATTTGGCAACTCAAAAGATGACGCCTCCCTCCCTCAAATAAAAATCGTACTTTCAGTGCTTGAT
GTGCTGGGTTTGCCCCTCACCGTTAGTGTAGTCCCTGGAAATTGTGCTGATGATCCTCTCTATATCCCTGCAATGGAAAAGGTGAAAAAATCTACGGGAC
AATCTGGATTACTTTTTGTGGGAGATTGCAAAATGGGTGCCATAGCAACTCGTTTGTATACGACTATCAATAATGACTTTTATTTATGCCCGTTATCAGA
AGTCTCTCATCCTACTCAGGAAATTTATTCTGCAATCATAGCACATCAGGAGTCTAATCTTTCCTTCACACAAGTTTCACGATCGTACTATGATGGAAGC
GATGCGATTATAGCCGAAGGATTTGAGAAAAAAATATCTCATTCAATGGAATATGAGGGGAAAATCATAACCTGGGAGGAACGGCTAATCTACGCAAAAT
CATTTGCTCATGCAAATAAATTCAGATTATCACTTGAAGAGCAAGTAAAAAAAGCTTTCTTTGAGATAAATTCAATGAATAAAAGAGGAAAGGGAAAGAA
AATTTACCGAACAATCGAGGAAGCAAAAGAAAAAGTACATGCTATTCTTGGAGATAAGGGATTAACAGCGGTATTCGAAGTTGAGTATATCGAGCATATT
AGTAATACTCCAAAACGAAAATACGGAAACAATCCCGCCAGAATTGAACAATCGACGAGAATTGAGGTTAAACCAACTATTAACTTGCAAGCCCTTCAAC
AAGCGCAGGAATTATCAGGATGGAGGGTATATGTAACAAATAAACCAGAAAATGAATTATCGATGCAAGATGTTGTTCTGACTTACCGTGATCAGTATAT
CATAGAGCATCAATTTCATCGGCTGAAGGGAAAGGCACTTTCACTTGCCCCAATGTTTATTCAACGAGATGACAGAATTGATGGTTTAGTGAAGTTTTTG
ACTATTGTAATGAGACCACTTGTTATTATTGAGAAAAAAGTCAGGGATTCGCTGAAAAGTAGAGGTCAGGGTTTGAGTGGTCTTTTCGAATATAATCCAA
CGAAAATAGTAAATAATCCTAAAACTGAAAGAATTATTGAGTTTTTCAAAGAGATTTATTTGTTAGTTTCATTTTATGGTGAACAGGTTTTTTACACAAT
TACTGGGATAAATCAAAAGCATCGAGAGATTTTAAATCTGATGAATGTTGATATTAGTGTTTATACTCAATTGGGATCAATTCAGGAATCTGAATTTAAG
ATCAGCGAACGGTGAG
AAATTGAACACATCGGCGGAATCCCATATATCTTTGAAACATTAAAAGAACTTCAAATCATACGAATTTTGAATGAGGTATATTCGCCTCACAGAAACTG
GGTGGGTTTGCCGATTGGTGAAACGATTGCCATTTGGATCTGCTACTGCCTGACCGAAAATGATCATCGTATGTGTCCCTTGGAGAAGTGGGTTACTACC
AAAAAAAATTTACTGGAAAAATTGATTGGTTTTCAATTTAGTCCAAAATGCTTTACTGATGACCATTTGGCTCGTATATTATCTCTATTGCACAATAATG
AACTTTGGAACCGATTTGAATCTGAATTAAATCGTTCTACACTGCGTATATATGGTTTAACGGATGAAAACATCGTCCGTCTTGATATGACAACAGTAAA
CAGCAATGGAATTATCGATAAAAACGGATTAATACAATTTGGCAACTCAAAAGATGACGCCTCCCTCCCTCAAATAAAAATCGTACTTTCAGTGCTTGAT
GTGCTGGGTTTGCCCCTCACCGTTAGTGTAGTCCCTGGAAATTGTGCTGATGATCCTCTCTATATCCCTGCAATGGAAAAGGTGAAAAAATCTACGGGAC
AATCTGGATTACTTTTTGTGGGAGATTGCAAAATGGGTGCCATAGCAACTCGTTTGTATACGACTATCAATAATGACTTTTATTTATGCCCGTTATCAGA
AGTCTCTCATCCTACTCAGGAAATTTATTCTGCAATCATAGCACATCAGGAGTCTAATCTTTCCTTCACACAAGTTTCACGATCGTACTATGATGGAAGC
GATGCGATTATAGCCGAAGGATTTGAGAAAAAAATATCTCATTCAATGGAATATGAGGGGAAAATCATAACCTGGGAGGAACGGCTAATCTACGCAAAAT
CATTTGCTCATGCAAATAAATTCAGATTATCACTTGAAGAGCAAGTAAAAAAAGCTTTCTTTGAGATAAATTCAATGAATAAAAGAGGAAAGGGAAAGAA
AATTTACCGAACAATCGAGGAAGCAAAAGAAAAAGTACATGCTATTCTTGGAGATAAGGGATTAACAGCGGTATTCGAAGTTGAGTATATCGAGCATATT
AGTAATACTCCAAAACGAAAATACGGAAACAATCCCGCCAGAATTGAACAATCGACGAGAATTGAGGTTAAACCAACTATTAACTTGCAAGCCCTTCAAC
AAGCGCAGGAATTATCAGGATGGAGGGTATATGTAACAAATAAACCAGAAAATGAATTATCGATGCAAGATGTTGTTCTGACTTACCGTGATCAGTATAT
CATAGAGCATCAATTTCATCGGCTGAAGGGAAAGGCACTTTCACTTGCCCCAATGTTTATTCAACGAGATGACAGAATTGATGGTTTAGTGAAGTTTTTG
ACTATTGTAATGAGACCACTTGTTATTATTGAGAAAAAAGTCAGGGATTCGCTGAAAAGTAGAGGTCAGGGTTTGAGTGGTCTTTTCGAATATAATCCAA
CGAAAATAGTAAATAATCCTAAAACTGAAAGAATTATTGAGTTTTTCAAAGAGATTTATTTGTTAGTTTCATTTTATGGTGAACAGGTTTTTTACACAAT
TACTGGGATAAATCAAAAGCATCGAGAGATTTTAAATCTGATGAATGTTGATATTAGTGTTTATACTCAATTGGGATCAATTCAGGAATCTGAATTTAAG
ATCAGCGAACGGTGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1734 bp | 577 aa | 82 | 1815 | + | No |
Chemistry : DDE
ORF sequence :
MIAPTHQIEHIGGIPYIFETLKELQIIRILNEVYSPHRNWVGLPIGETIAIWICYCLTENDHRMCPLEKWVTTKKNLLEKLIGFQFSPKCFTDDHLARIL
SLLHNNELWNRFESELNRSTLRIYGLTDENIVRLDMTTVNSNGIIDKNGLIQFGNSKDDASLPQIKIVLSVLDVLGLPLTVSVVPGNCADDPLYIPAMEK
VKKSTGQSGLLFVGDCKMGAIATRLYTTINNDFYLCPLSEVSHPTQEIYSAIIAHQESNLSFTQVSRSYYDGSDAIIAEGFEKKISHSMEYEGKIITWEE
RLIYAKSFAHANKFRLSLEEQVKKAFFEINSMNKRGKGKKIYRTIEEAKEKVHAILGDKGLTAVFEVEYIEHISNTPKRKYGNNPARIEQSTRIEVKPTI
NLQALQQAQELSGWRVYVTNKPENELSMQDVVLTYRDQYIIEHQFHRLKGKALSLAPMFIQRDDRIDGLVKFLTIVMRPLVIIEKKVRDSLKSRGQGLSG
LFEYNPTKIVNNPKTERIIEFFKEIYLLVSFYGEQVFYTITGINQKHREILNLMNVDISVYTQLGSIQESEFKISER
SLLHNNELWNRFESELNRSTLRIYGLTDENIVRLDMTTVNSNGIIDKNGLIQFGNSKDDASLPQIKIVLSVLDVLGLPLTVSVVPGNCADDPLYIPAMEK
VKKSTGQSGLLFVGDCKMGAIATRLYTTINNDFYLCPLSEVSHPTQEIYSAIIAHQESNLSFTQVSRSYYDGSDAIIAEGFEKKISHSMEYEGKIITWEE
RLIYAKSFAHANKFRLSLEEQVKKAFFEINSMNKRGKGKKIYRTIEEAKEKVHAILGDKGLTAVFEVEYIEHISNTPKRKYGNNPARIEQSTRIEVKPTI
NLQALQQAQELSGWRVYVTNKPENELSMQDVVLTYRDQYIIEHQFHRLKGKALSLAPMFIQRDDRIDGLVKFLTIVMRPLVIIEKKVRDSLKSRGQGLSG
LFEYNPTKIVNNPKTERIIEFFKEIYLLVSFYGEQVFYTITGINQKHREILNLMNVDISVYTQLGSIQESEFKISER
Blast result :
Comments
ISMhu4 is 40% aa similar to ISMhp1. There are 6 full copies in Metha,ospirillum hungatei genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission Genbank.