ISMba13
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1706 bp
Ends
IR Length : 18/20
IRL : CTGTCTTTCCGCAGATGTCTGACAAATTTATCTATTTTTTAGCTAATATA
IRR : CTGACCTTCCGCAGATGTCTCCTCAAAAGTAGTATTTTTCACAATTTTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGAGTATAATATTTTGGGTAAGT | ATAATG | GATTGAGTAAGGTGCTGGA | 6 |
DNA sequence
CTGTCTTTCCGCAGATGTCTGACAAATTTATCTATTTTTTAGCTAATATATAACTATCATAATATTATACTTTTTTTCGGTTTTCATTATGCTTGTTACA
ACACGTTCTCTTGATCATCACGGAATCGTTTCTGGCATTTACGATGAACTTGAAATTGGAAAAGTGATTGATGAAGTGCTGCCCAAGTTTGGGCAGCACA
AGTTAGCTCACTCTATTGTAGTAAAGGCAATGATTCTTAACTGTCTTGGTTTCGTAGACAGTCGTCTTTACATGTACTCTCAGTACTTTGAAACCCTTCC
TGTTGAACGGCTTCTTGGCCCCGAGATCAGTGCTTCTGACCTTACTGATGATGTTTTAGGTCGAACTCTTGACGCAATATATGAAGCAGATCCTACTCAA
CTTTTCATGAAGCTTTCCTTGAAAATGCTGGAAATTGTTAACATCAGAACTCAACTTCTCCAATCTGACACCACTAATTTTAGCCTTCATGGAGATTACA
ATTATATCAATGACGGTTCTGTCATCGAAATTACATATGGTCACGCAAAAGACGGTAGAGATGACCTGAAACGTTTTGGACTTGGAATGATAACAAATCA
GTATGGAATTCCACTATTTGCAAAAGCTTACTCTGGTAACGCATCAGACAAAGAAACCATCATAGAGGCAATGAAAATACTTCAAGAAAACATAACGTTT
CCTGATGATGTTTACTACATAGCTGATAGTGCTCTATATTCTGAAGGAAACATCAAAGCAATGATAGAAGGCATGAAGTGGATTACTCGTGTTCCTTCAA
CACTAAACCTTGCAAAAAACTTGTTGATTTCTGATCTTGAGTTCAAAAACGGAGAGGATCCACGCTATTCATTTTACGAAACTATTGTTGAATATGGTGG
TATAAAGCAAAAATGGGTAGTTGTTTATTCCACAGAAATGCAGAAAAGAAAAGACATTACTTTTGAAAGAAAAATTCAAAAGAAGGTTAATGAATCCCAG
AAAGATCTCAAAGACCTCAAAAAGATCAAGTTTGCTTGTGAAAAGGATGCCATAGCAGCTTTGGAAAGATGGAAGAAAGAGAACCCTCATTGTTTGCTGG
AAACCGTAGAGATTTCCACGGTTTCAACAAAGGAAAACGGTAAAATAGGAAGACCAAAGAAGAATGAAAAGCCTATTATTCACTATGTTGTAAATGCAAA
AGCAGTCCGAAACTACGAAATAGAATTGAATGAAAAAGAGTATCAAGGAAGATTTATAATCGCAAGTAACGATCTCAATCTTGATGCTGAAAAGATGCTG
GAATACTACAAGAACCAGAGCAAGGTCGAAAAAGGTTTCAGGTTCATAAAGGATAAAAGTTTCAGGGTTTCCGAGGTTTATTTGAAAAAACCTCAAAGAA
TTGAAGCTCTCTCAATGATAATGGTGTTAACTCTGATGGTCTATTCGGTAGCGGAATGGCAGCTGAGAGAGAAGCTAAAAGAAACAGGGGAAACAATACC
GAATCAGGTTAAAAAGCAAACACAAAAGCCCACTTTGAAGTGGGCTTTTGTGCTGATGAGGGGAATTACAGAAGTAAAAGTGGAAGTTGATTCAAAGGTG
ATAACCAAAATTGCCAACATGGATGAAATTAAGAGCAAGATAATAAGGTTGATGGGGAAAAATTGTGAAAAATACTACTTTTGAGGAGACATCTGCGGAA
GGTCAG
ACACGTTCTCTTGATCATCACGGAATCGTTTCTGGCATTTACGATGAACTTGAAATTGGAAAAGTGATTGATGAAGTGCTGCCCAAGTTTGGGCAGCACA
AGTTAGCTCACTCTATTGTAGTAAAGGCAATGATTCTTAACTGTCTTGGTTTCGTAGACAGTCGTCTTTACATGTACTCTCAGTACTTTGAAACCCTTCC
TGTTGAACGGCTTCTTGGCCCCGAGATCAGTGCTTCTGACCTTACTGATGATGTTTTAGGTCGAACTCTTGACGCAATATATGAAGCAGATCCTACTCAA
CTTTTCATGAAGCTTTCCTTGAAAATGCTGGAAATTGTTAACATCAGAACTCAACTTCTCCAATCTGACACCACTAATTTTAGCCTTCATGGAGATTACA
ATTATATCAATGACGGTTCTGTCATCGAAATTACATATGGTCACGCAAAAGACGGTAGAGATGACCTGAAACGTTTTGGACTTGGAATGATAACAAATCA
GTATGGAATTCCACTATTTGCAAAAGCTTACTCTGGTAACGCATCAGACAAAGAAACCATCATAGAGGCAATGAAAATACTTCAAGAAAACATAACGTTT
CCTGATGATGTTTACTACATAGCTGATAGTGCTCTATATTCTGAAGGAAACATCAAAGCAATGATAGAAGGCATGAAGTGGATTACTCGTGTTCCTTCAA
CACTAAACCTTGCAAAAAACTTGTTGATTTCTGATCTTGAGTTCAAAAACGGAGAGGATCCACGCTATTCATTTTACGAAACTATTGTTGAATATGGTGG
TATAAAGCAAAAATGGGTAGTTGTTTATTCCACAGAAATGCAGAAAAGAAAAGACATTACTTTTGAAAGAAAAATTCAAAAGAAGGTTAATGAATCCCAG
AAAGATCTCAAAGACCTCAAAAAGATCAAGTTTGCTTGTGAAAAGGATGCCATAGCAGCTTTGGAAAGATGGAAGAAAGAGAACCCTCATTGTTTGCTGG
AAACCGTAGAGATTTCCACGGTTTCAACAAAGGAAAACGGTAAAATAGGAAGACCAAAGAAGAATGAAAAGCCTATTATTCACTATGTTGTAAATGCAAA
AGCAGTCCGAAACTACGAAATAGAATTGAATGAAAAAGAGTATCAAGGAAGATTTATAATCGCAAGTAACGATCTCAATCTTGATGCTGAAAAGATGCTG
GAATACTACAAGAACCAGAGCAAGGTCGAAAAAGGTTTCAGGTTCATAAAGGATAAAAGTTTCAGGGTTTCCGAGGTTTATTTGAAAAAACCTCAAAGAA
TTGAAGCTCTCTCAATGATAATGGTGTTAACTCTGATGGTCTATTCGGTAGCGGAATGGCAGCTGAGAGAGAAGCTAAAAGAAACAGGGGAAACAATACC
GAATCAGGTTAAAAAGCAAACACAAAAGCCCACTTTGAAGTGGGCTTTTGTGCTGATGAGGGGAATTACAGAAGTAAAAGTGGAAGTTGATTCAAAGGTG
ATAACCAAAATTGCCAACATGGATGAAATTAAGAGCAAGATAATAAGGTTGATGGGGAAAAATTGTGAAAAATACTACTTTTGAGGAGACATCTGCGGAA
GGTCAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1596 bp | 531 aa | 89 | 1684 | + | No |
Chemistry : DDE
ORF sequence :
MLVTTRSLDHHGIVSGIYDELEIGKVIDEVLPKFGQHKLAHSIVVKAMILNCLGFVDSRLYMYSQYFETLPVERLLGPEISASDLTDDVLGRTLDAIYEA
DPTQLFMKLSLKMLEIVNIRTQLLQSDTTNFSLHGDYNYINDGSVIEITYGHAKDGRDDLKRFGLGMITNQYGIPLFAKAYSGNASDKETIIEAMKILQE
NITFPDDVYYIADSALYSEGNIKAMIEGMKWITRVPSTLNLAKNLLISDLEFKNGEDPRYSFYETIVEYGGIKQKWVVVYSTEMQKRKDITFERKIQKKV
NESQKDLKDLKKIKFACEKDAIAALERWKKENPHCLLETVEISTVSTKENGKIGRPKKNEKPIIHYVVNAKAVRNYEIELNEKEYQGRFIIASNDLNLDA
EKMLEYYKNQSKVEKGFRFIKDKSFRVSEVYLKKPQRIEALSMIMVLTLMVYSVAEWQLREKLKETGETIPNQVKKQTQKPTLKWAFVLMRGITEVKVEV
DSKVITKIANMDEIKSKIIRLMGKNCEKYYF
DPTQLFMKLSLKMLEIVNIRTQLLQSDTTNFSLHGDYNYINDGSVIEITYGHAKDGRDDLKRFGLGMITNQYGIPLFAKAYSGNASDKETIIEAMKILQE
NITFPDDVYYIADSALYSEGNIKAMIEGMKWITRVPSTLNLAKNLLISDLEFKNGEDPRYSFYETIVEYGGIKQKWVVVYSTEMQKRKDITFERKIQKKV
NESQKDLKDLKKIKFACEKDAIAALERWKKENPHCLLETVEISTVSTKENGKIGRPKKNEKPIIHYVVNAKAVRNYEIELNEKEYQGRFIIASNDLNLDA
EKMLEYYKNQSKVEKGFRFIKDKSFRVSEVYLKKPQRIEALSMIMVLTLMVYSVAEWQLREKLKETGETIPNQVKKQTQKPTLKWAFVLMRGITEVKVEV
DSKVITKIANMDEIKSKIIRLMGKNCEKYYF
Blast result :
Comments
ISMba13 is 69% aa similar to ISMth2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.