ISMba12
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1729 bp
Ends
IR Length : 18/20
IRL : CCTAGATTCGGCAGGTAAACATATATGTTAATATAATTAATATTCATATC
IRR : CCTATATTCGGCAGGTTAACGCAACTAGAGATATATATTTTCATATTTCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGAATAGAAGAAACA | GTATAT | TAGCGATGGAAGAA | 6 |
DNA sequence
CCTAGATTCGGCAGGTAAACATATATGTTAATATAATTAATATTCATATCTTTTTTCTTGATCTTCTATGGCATATAAAAACAACAGTCGAAGAGTTGAC
TCCTCAATAAAACGTACAAGATTCTTAGGTCACCTTGGTCTTATTGTTGGAGTTTTCCGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCTA
AAGAACGAGATCACAAGGTTCCTCACTCCGTCTGCATCCTTGCCATGGTACTCAATGGTCTTGGTTTCATAGGACAACGTCTGTACCTTTTTCCTGATTT
TTTCAGGACTATTTCTATAGAAAGACTTTTTGGAGACGGTGTCACACGAGAAGACCTAAATCAATATGCTATTGGAGAAACTCTTGACAGAATCGTAAAG
TATGGTCCTGCAAAACTATTTACGGAAATCACTCTTCACATTATGAACCGTCTACCGATTCCTGTCCATTGTTTACACGCTGACACTACAAGTGTCAGCG
TTTATGGCGATTATGAAGACAAAGAAATTGAGTCTATTGATATTACTTTTGGGATTCCCAAAAACGGAAGATGGGACCTAAGACAATTTGTACTGAGCCT
GATTGTTAATCAGCATGGTATACCACTTTTCATGAACACACATTCAGGGAATGCTTCAGACAAAAACACAATTCTGGAAGCAATCAAGTCTATTAAATCA
GCTTTAAGCCCTGAAAGTAAAGTGTACTATGTTGCTGATAGTTCATTTTACACAGACAATAATATCAAGAATATAGGAAAGTCATTCTGGATCAGTCGCG
TTCCTGCAACAATTAATGAGGCAAAGGAAATGCTAACAGCAAATCTAAGCCTGAAAACGTTGAAAAGCGACGAAATATACTCGTTTTACCAAACCTTTGT
AGAATATGGAGGAGTTAAACAAAAGTGGGTTTTGTTACTCTCTCATAAAATGAAAGAGAAGAAAGAAGTAACTCTCAGAAGAAAGCTTGAAAAGGAACTT
GAAAAAGCAGAAAAGTCGTTTAAAAAGTTGACAGGAGAGGACTTCTTCTGTGAAGAAGATGCATTAAAAGCAGCAGAAAAATGGATTCAGGATTTCCCTT
CAATTGTGTTTGAAAAAGTAAATTTGAAAACCATTAAAAAACGTGAAGCAGGCAAAAGAGTCAGACCTTCGAAAAATGAGGAATTAAAGACATATTACAG
GATTAATGGAATAATAAAAGTTAACGAAGCTTTTGTTTTAAAAGAAATAGAGAAAATGGGACTTTTCATTATTGCAAGTAATGATATCAGCCTTTCTCCT
GAAGAGATGCTGAAGTATTACAAAGGACAGGATAACGTAGAAAAAGGATTTAGATTTTTGAAAAGTGATACCTTTAGCATATCGAAAGTGTATCTCAAGA
ATAAATCAAGAATTGAAGCGTTGACAATGATAATGGTTCTCTGCTTAATGATTTATGCAATTGCAGAATGGAAATTAAGAATAAAATTAGAAGAAGAAAA
TGAAACAGTTCCAGATCAAAAAGGAAAACCAACAAAAAAACCGACAATGAGATGGATATTTTTCAAGTTTCAGGGAATTACAGAACTTATAACTCAGAAA
AAAGGGAAAAAAGAGGAAAAAAAGTCAGAAATTCTAAATATGGAAGAGATTAACTGGAAGATATTGAGTATAATGGGAGAGAAATATGAAAATATATATC
TCTAGTTGCGTTAACCTGCCGAATATAGG
TCCTCAATAAAACGTACAAGATTCTTAGGTCACCTTGGTCTTATTGTTGGAGTTTTCCGAGAACTTGAAGTTGACAAACTGATCGATGAGAAACTTCCTA
AAGAACGAGATCACAAGGTTCCTCACTCCGTCTGCATCCTTGCCATGGTACTCAATGGTCTTGGTTTCATAGGACAACGTCTGTACCTTTTTCCTGATTT
TTTCAGGACTATTTCTATAGAAAGACTTTTTGGAGACGGTGTCACACGAGAAGACCTAAATCAATATGCTATTGGAGAAACTCTTGACAGAATCGTAAAG
TATGGTCCTGCAAAACTATTTACGGAAATCACTCTTCACATTATGAACCGTCTACCGATTCCTGTCCATTGTTTACACGCTGACACTACAAGTGTCAGCG
TTTATGGCGATTATGAAGACAAAGAAATTGAGTCTATTGATATTACTTTTGGGATTCCCAAAAACGGAAGATGGGACCTAAGACAATTTGTACTGAGCCT
GATTGTTAATCAGCATGGTATACCACTTTTCATGAACACACATTCAGGGAATGCTTCAGACAAAAACACAATTCTGGAAGCAATCAAGTCTATTAAATCA
GCTTTAAGCCCTGAAAGTAAAGTGTACTATGTTGCTGATAGTTCATTTTACACAGACAATAATATCAAGAATATAGGAAAGTCATTCTGGATCAGTCGCG
TTCCTGCAACAATTAATGAGGCAAAGGAAATGCTAACAGCAAATCTAAGCCTGAAAACGTTGAAAAGCGACGAAATATACTCGTTTTACCAAACCTTTGT
AGAATATGGAGGAGTTAAACAAAAGTGGGTTTTGTTACTCTCTCATAAAATGAAAGAGAAGAAAGAAGTAACTCTCAGAAGAAAGCTTGAAAAGGAACTT
GAAAAAGCAGAAAAGTCGTTTAAAAAGTTGACAGGAGAGGACTTCTTCTGTGAAGAAGATGCATTAAAAGCAGCAGAAAAATGGATTCAGGATTTCCCTT
CAATTGTGTTTGAAAAAGTAAATTTGAAAACCATTAAAAAACGTGAAGCAGGCAAAAGAGTCAGACCTTCGAAAAATGAGGAATTAAAGACATATTACAG
GATTAATGGAATAATAAAAGTTAACGAAGCTTTTGTTTTAAAAGAAATAGAGAAAATGGGACTTTTCATTATTGCAAGTAATGATATCAGCCTTTCTCCT
GAAGAGATGCTGAAGTATTACAAAGGACAGGATAACGTAGAAAAAGGATTTAGATTTTTGAAAAGTGATACCTTTAGCATATCGAAAGTGTATCTCAAGA
ATAAATCAAGAATTGAAGCGTTGACAATGATAATGGTTCTCTGCTTAATGATTTATGCAATTGCAGAATGGAAATTAAGAATAAAATTAGAAGAAGAAAA
TGAAACAGTTCCAGATCAAAAAGGAAAACCAACAAAAAAACCGACAATGAGATGGATATTTTTCAAGTTTCAGGGAATTACAGAACTTATAACTCAGAAA
AAAGGGAAAAAAGAGGAAAAAAAGTCAGAAATTCTAAATATGGAAGAGATTAACTGGAAGATATTGAGTATAATGGGAGAGAAATATGAAAATATATATC
TCTAGTTGCGTTAACCTGCCGAATATAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1638 bp | 545 aa | 68 | 1705 | + | No |
Chemistry : DDE
ORF sequence :
MAYKNNSRRVDSSIKRTRFLGHLGLIVGVFRELEVDKLIDEKLPKERDHKVPHSVCILAMVLNGLGFIGQRLYLFPDFFRTISIERLFGDGVTREDLNQY
AIGETLDRIVKYGPAKLFTEITLHIMNRLPIPVHCLHADTTSVSVYGDYEDKEIESIDITFGIPKNGRWDLRQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAIKSIKSALSPESKVYYVADSSFYTDNNIKNIGKSFWISRVPATINEAKEMLTANLSLKTLKSDEIYSFYQTFVEYGGVKQKWVLLLSHKMKEKKE
VTLRRKLEKELEKAEKSFKKLTGEDFFCEEDALKAAEKWIQDFPSIVFEKVNLKTIKKREAGKRVRPSKNEELKTYYRINGIIKVNEAFVLKEIEKMGLF
IIASNDISLSPEEMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKNKSRIEALTMIMVLCLMIYAIAEWKLRIKLEEENETVPDQKGKPTKKPTMRWIFFK
FQGITELITQKKGKKEEKKSEILNMEEINWKILSIMGEKYENIYL
AIGETLDRIVKYGPAKLFTEITLHIMNRLPIPVHCLHADTTSVSVYGDYEDKEIESIDITFGIPKNGRWDLRQFVLSLIVNQHGIPLFMNTHSGNASDKN
TILEAIKSIKSALSPESKVYYVADSSFYTDNNIKNIGKSFWISRVPATINEAKEMLTANLSLKTLKSDEIYSFYQTFVEYGGVKQKWVLLLSHKMKEKKE
VTLRRKLEKELEKAEKSFKKLTGEDFFCEEDALKAAEKWIQDFPSIVFEKVNLKTIKKREAGKRVRPSKNEELKTYYRINGIIKVNEAFVLKEIEKMGLF
IIASNDISLSPEEMLKYYKGQDNVEKGFRFLKSDTFSISKVYLKNKSRIEALTMIMVLCLMIYAIAEWKLRIKLEEENETVPDQKGKPTKKPTMRWIFFK
FQGITELITQKKGKKEEKKSEILNMEEINWKILSIMGEKYENIYL
Blast result :
Comments
ISMba12 is 93% aa similar to ISMma3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Diect submission GenBank.