ISMma18

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei Go1
DNA section
IS Length : 1718 bp

Ends


IR Length : 18/23

IRL : CCTACTTTCCGCAGTAAAATTTCTGAATTTTATATTTTTTAAATTATGCA
IRR : CCCACTTTCCGCACTATTTTTTCATACATAATATTTTTCGTACTTTTCTC

Insertion site


Left flankDirect repeatRight flankDR Length
GGAGACGGCCAGGTATTCAATGTGGCTATGGGGAAA6

DNA sequence

CCTACTTTCCGCAGTAAAATTTCTGAATTTTATATTTTTTAAATTATGCAAGTACTTTTTATAAAATTTCTTCCTATTTTACCGTGATGACTCTCTCTCC
CAGCTCTGAATCCACTACCCATCTTGGTCATTATGGCCTTATTGCTGGCGTATTTGACGAACTTGAAATTTCAGATTTGATTGACAATCTTCTCCCCAAG
AAAAGTAGCCATAACATCCCTCATTCTACTGTGATCAAAGCAATGTGCATTAACGGTTTAGGGTTTACTGAGCGTCGTCTTTACCTATTTCCTGACTTTT
TTGAAAATTTACCCACTGAAAGGTTACTGGGAGAAGGTGTTCTCCCAGAACACCTTAATGATGACGTTTTTGGCAGAACTTTGGATAAAATCTATGAATT
TGGAGCAACCGAACTTTTCAACCATATAATTCTGCAAGCTATGAAACACGTTCCTATTAACCCCCGTTTTTGCCATGCAGATACTACAAATTTCAGTGTT
TATGGTGACTATGACCACGATAATGATGGCAAAACTATCAACATTACTTATGGTCATCCTAAAGACAAAAGAGTCGACTTACTTCGCTTTACCATTTCCA
TGGTTACTGACCAGAAAGGAATTCCTCTTTTCGTAAGAGCATTAGACGGCAACAGTTCCGATAAGAAAGCTCTCATCAAAACCATAAAGGAACTAACACA
GAACCTGAATCTTGATGAGAGAGTCTACCATGTTGCAGACAGCGCATTTTATACTGAAGATAATGTGAAAGAGATAGGAACTAATGCTTTTTTCATATCT
AGAGTTCCTGCAACCATCAATGAAGCAAAGGAACTCTTGATGGCAAATTTAATTCTTAAAACATGCTCTGATGAACGTTATTCTTGTTATGCTGTAAAGT
CCTGTTATGGCGGAGTAGAACAGTTATGGGGTGTATTCTGCTCAGAAGAAATGAAAAAGAAGGAAGAGAAAACGTTTGATGAAAAGATTCTTAAGGAGCT
TGAAGCAGCAGAAAAATCCCTTAAAAAGCTTTCTAATCGTGAATTTGCCTGTGAAGCTGATGCAAGAATGGCTGCTGAACAATGGTTGAAAGAGAATGAA
TCGTATGAGTTCACAAAACTTGATATAAAAAATAGGTCTCACAGACTTGAAAACAAGAAAGGAAGACCAAGGAAAGATGAAAAGGTACAGACTTTCTACC
TGATAGAAGCACAGATAAAACATGATCAGGAGAAAGTAAAGGAAAGAAGAGCAAAGTTAGGAAGGTTCATTCTTGCAACCAATGATCTGGAGTTGACTCC
AGATCAACTCCTGGAATACTATAAGGAACAGGGAACGGTTGAGAGAGGATTCAGGTTCCTGAAAGATAAGAGTTTCAGAGTGTCTGAGGTATACCTGAAA
AAAGAATCCAGAATAGAAGCACTTGCAATGGTAATGGTTCTGTGCTTATTGTTGTATTCAATAGCTGAGTGGAAACTGAGAACAAGATTGGAAGAGGCAA
AAGAAGCTATCAGAAACCAGGTTAAGAAGAAAACACAGACTCCAACCATGAAATGGGTATTCTTCCTCTTCAGAAGAGTAACAGAATTAGTAATCGAAGT
TGATGGAAAAAGGATAAAGAAGGTATTAAATCTGGATGAGGAAACCATTAAAGTGTTGAAACTGATGGGAGAAAAGTACGAAAAATATTATGTATGAAAA
AATAGTGCGGAAAGTGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1614 bp537 aa841697+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMTLSPSSESTTHLGHYGLIAGVFDELEISDLIDNLLPKKSSHNIPHSTVIKAMCINGLGFTERRLYLFPDFFENLPTERLLGEGVLPEHLNDDVFGRTL
DKIYEFGATELFNHIILQAMKHVPINPRFCHADTTNFSVYGDYDHDNDGKTINITYGHPKDKRVDLLRFTISMVTDQKGIPLFVRALDGNSSDKKALIKT
IKELTQNLNLDERVYHVADSAFYTEDNVKEIGTNAFFISRVPATINEAKELLMANLILKTCSDERYSCYAVKSCYGGVEQLWGVFCSEEMKKKEEKTFDE
KILKELEAAEKSLKKLSNREFACEADARMAAEQWLKENESYEFTKLDIKNRSHRLENKKGRPRKDEKVQTFYLIEAQIKHDQEKVKERRAKLGRFILATN
DLELTPDQLLEYYKEQGTVERGFRFLKDKSFRVSEVYLKKESRIEALAMVMVLCLLLYSIAEWKLRTRLEEAKEAIRNQVKKKTQTPTMKWVFFLFRRVT
ELVIEVDGKRIKKVLNLDEETIKVLKLMGEKYEKYYV

 

Blast result :
Comments
ISMma18 is 98% aa similar to ISMac6.
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461