ISMbu6

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007955 ND Methanococcoides burtonii
Methanococcoides burtonii DSM 6242
DNA section
IS Length : 1252 bp

Ends


IR Length : 22/27

IRL : GATAGCGTCACTAAATTGCTGTAAATTATAATTAGTCCTGTACCTTTGTT
IRR : GGTAGTGTCCCTTAATTGCTGTAACTTTATCCTGTACCCCTCTATGCTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GATATTTTGCTAAGAACACTGTCCTGAAAATGCAAA8

DNA sequence

GATAGCGTCACTAAATTGCTGTAAATTATAATTAGTCCTGTACCTTTGTTAGGTTTACAACAACAAAAAGGAACAGGACAATGGAATTATACGATTTAAT
ATCAGATTATCTTAACGACAGCAACGTTTCCTTGAAACCCCTCATAACATACTTCTTAAACGAAGTTATGGAACAGGAAGCAATAGAACAATCTGGTGCA
GGAAAGCACGAACGAAGCATAACAAGAACAGCTCATAGGAATGGGTATCGTGATAGGTCACTGACAACAAGACATGGAGAACTTACACTCAAAAAACCAC
AACTAAGAGACTTTCCGTTCACGACCCAAGTATTTGAAAGATACTCTCGAACTGAAAAAGCAATCGAAAATGCCATTGTTGAATCATATGTTCAAGGTGT
TTCAACAAGAAAAGTTGAAAAAATAATTTCACAATTAGGAGTGGAAAGTATCTCAAGATCACGTGTTTCAAGGATTGCTCAAGATCTTGACAAAACTGTT
CATGGATTTATGAACAAGCCTATTGAGCATGAAATTAAGTATCTTTATGTTGATGCTACTTATCTAAAAGTTAGAGATCGAGTACGATATGTAAACAAAG
CAGTGTTTATTGTTGCAGGTGTAAAGAATGATGGATATCGTGAGATATTAGGTGTTAAGATTGCTGACAGTGAAGAGGCTATGTTTTGGGAGGAAATGTT
TACCGATCTGAAAGAAAGAGGATTAAGAGGGGTAGAACTAGTCATTTCAGATGGGCATAAGGGTATCCAAAGAGCTGTTGAAAGGCAATTCTTAGGAGCA
AGTTGGCAAATGTGTATAGTACATTTGGAAAGACTCATTTTAAAGAAATTACCAAGAAAACATCACAAGGAAGCGATGGAATCATTTAAAGAAGTACAGG
ATGATCAAACAAAACTCTTGGGATTGATGGTTGAATGGGATAGACCTGGATTTGAGAAAGCAGCAGAAACAATTGAGAGATTTCAGCATGGATTGACCAA
TTATCAAGCATTTCCAAAGGAACATTGGAAACGGATAAAGACAACAAATATGATTGAAAGATTGAATAAAGAGGTCAAAAGAAGATCGAAAGTTGTTGGA
GCGTTTCCAAATGATGAATCATTGATGAGATTAGTGATTGCAGTATTGATCGATCAAAATGAAAATTGGATTACGGGAAATAGATATTTAACGATGGAAG
ACTAAGCATAGAGGGGTACAGGATAAAGTTACAGCAATTAAGGGACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1125 bp374 aa821206+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELYDLISDYLNDSNVSLKPLITYFLNEVMEQEAIEQSGAGKHERSITRTAHRNGYRDRSLTTRHGELTLKKPQLRDFPFTTQVFERYSRTEKAIENAIV
ESYVQGVSTRKVEKIISQLGVESISRSRVSRIAQDLDKTVHGFMNKPIEHEIKYLYVDATYLKVRDRVRYVNKAVFIVAGVKNDGYREILGVKIADSEEA
MFWEEMFTDLKERGLRGVELVISDGHKGIQRAVERQFLGASWQMCIVHLERLILKKLPRKHHKEAMESFKEVQDDQTKLLGLMVEWDRPGFEKAAETIER
FQHGLTNYQAFPKEHWKRIKTTNMIERLNKEVKRRSKVVGAFPNDESLMRLVIAVLIDQNENWITGNRYLTMED

 

Blast result :
Comments
ISMbu6 is 80% aa similar to ISMma16.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct submission GenBank