ISC1250

  • Family IS256
  • Group ISC1250
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus
DNA section
IS Length : 1261 bp

Ends


IR Length : 26/27

IRL : GGGCGGCTCAGGAGTCCATTGCGATTTCAATTTATTTCTATAGAATTAGA
IRR : GGGCGGCTCAGGAGTCCATTGCGAATTGTATTTCCTGACTCTTAATTACA

Insertion site


Left flankDirect repeatRight flankDR Length
CCATCAAGCTCTGGTATTCCAAATGTAGT9

DNA sequence

GGGCGGCTCAGGAGTCCATTGCGATTTCAATTTATTTCTATAGAATTAGATAAGAGAAATTGATTCCACATTTTGAGTAATACTAATAGGGGGCGAGCAT
GAGGTAATATCATGGAACTCTTAACTGTTAACGAGGTAGCCCTCTACGGCGTTAAGCTAAGGGAGCTCGTAGAGGGACCCGGACAGAGCTCGACCCTCAC
GCTCGTCCCCAAGATATTACCCGATGATGCCCTATTAAACAAATCGGTCCCGGAGATCGAGAGGATGGCCTTGGAGGAGGCGGAGAGGGTGAGCCCCAAC
TACAGGAGGGGTAAGGAGGTGAAGAGGAAGGGTTACGCGAGGTACAGGTTCCTTAAGGGGTTTAGGATTGTGATGGTGGGAAGGGAGATGAGGTACGAGC
TGGAGTGGATCTCGGTGAGGCTTCCCGTGCTTTACTGTGAGGGGAGAGTGAGGACGCAGGTTGAGGAGACTCTCCTGAGGGAGGAAAGGAAGGTATTCAT
GGCCTTGATGGCGGTCTACTCGGTGAAGGGTGGTAAGCTCAACGCAAAGATCTGGATGCCCGAGATTGAAATTGGCGGTGACTTCAGGTACGTTATAGTT
GACGGGAAGTACGTGAAGCTTAAGAGGCGAAAGGCTGTCCTCCTGGTGGCCATTGGCGTGACCCAGGAAGGAAGGAGGGCGGTACTCGAGGTCATCGTAA
GCGAGGCTGAGGACACCATGGCCTATTGGAGTCTCCTGGTCAGGGTTTGGAAGAGGTCGAGCTTCGTCCTGGTCGTAGCCGACGGGATCCAGGCCTTGGA
CAAGGCCATCTCCCTCGCCGAACTTCACGTGGGAAGGCAGGGCTGCCTGGTCCACCTCAAGCGCCGCGCGACCAAGGAGGAAAGGGAGGCTTTAGACGCG
ATCACCTCGTCGGCCGAGCTCGGAGAGATCAAGCCCGAGACCAACCCAACCCTTCTAAGCTACCTCGTTGCGAGCAAGGAGCTCTGGAAATGGCTCAAGA
CCAACAACCTGGTCGAGTCCTTCAACTCGCTCCTGGAGAGGAGGAGGTTCGGGTCGTTTCACAGTCCCTGGAGGATACTCCAGATCGCGCGGGCCATAGC
CCTCTACTACAACCTATTGACCTATTTTCTCACTATTGTAATAATATTACAATCATCTTCATTCCTCCCAATTCCTCAGAAATATATCCAATAATTTATA
CATTGAATAAGTGTAATTAAGAGTCAGGAAATACAATTCGCAATGGACTCCTGAGCCGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp360 aa1121191+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELLTVNEVALYGVKLRELVEGPGQSSTLTLVPKILPDDALLNKSVPEIERMALEEAERVSPNYRRGKEVKRKGYARYRFLKGFRIVMVGREMRYELEWI
SVRLPVLYCEGRVRTQVEETLLREERKVFMALMAVYSVKGGKLNAKIWMPEIEIGGDFRYVIVDGKYVKLKRRKAVLLVAIGVTQEGRRAVLEVIVSEAE
DTMAYWSLLVRVWKRSSFVLVVADGIQALDKAISLAELHVGRQGCLVHLKRRATKEEREALDAITSSAELGEIKPETNPTLLSYLVASKELWKWLKTNNL
VESFNSLLERRRFGSFHSPWRILQIARAIALYYNLLTYFLTIVIILQSSSFLPIPQKYIQ

 

Blast result :
Comments
ISC1250 is 48% aa similar to IS905A
References
[1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,
Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De
Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,
Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,
Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840