ISC1250
- Family IS256
- Group ISC1250
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus |
DNA section
IS Length : 1261 bp
Ends
IR Length : 26/27
IRL : GGGCGGCTCAGGAGTCCATTGCGATTTCAATTTATTTCTATAGAATTAGA
IRR : GGGCGGCTCAGGAGTCCATTGCGAATTGTATTTCCTGACTCTTAATTACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCATCAAGCT | CTGGTATTC | CAAATGTAGT | 9 |
DNA sequence
GGGCGGCTCAGGAGTCCATTGCGATTTCAATTTATTTCTATAGAATTAGATAAGAGAAATTGATTCCACATTTTGAGTAATACTAATAGGGGGCGAGCAT
GAGGTAATATCATGGAACTCTTAACTGTTAACGAGGTAGCCCTCTACGGCGTTAAGCTAAGGGAGCTCGTAGAGGGACCCGGACAGAGCTCGACCCTCAC
GCTCGTCCCCAAGATATTACCCGATGATGCCCTATTAAACAAATCGGTCCCGGAGATCGAGAGGATGGCCTTGGAGGAGGCGGAGAGGGTGAGCCCCAAC
TACAGGAGGGGTAAGGAGGTGAAGAGGAAGGGTTACGCGAGGTACAGGTTCCTTAAGGGGTTTAGGATTGTGATGGTGGGAAGGGAGATGAGGTACGAGC
TGGAGTGGATCTCGGTGAGGCTTCCCGTGCTTTACTGTGAGGGGAGAGTGAGGACGCAGGTTGAGGAGACTCTCCTGAGGGAGGAAAGGAAGGTATTCAT
GGCCTTGATGGCGGTCTACTCGGTGAAGGGTGGTAAGCTCAACGCAAAGATCTGGATGCCCGAGATTGAAATTGGCGGTGACTTCAGGTACGTTATAGTT
GACGGGAAGTACGTGAAGCTTAAGAGGCGAAAGGCTGTCCTCCTGGTGGCCATTGGCGTGACCCAGGAAGGAAGGAGGGCGGTACTCGAGGTCATCGTAA
GCGAGGCTGAGGACACCATGGCCTATTGGAGTCTCCTGGTCAGGGTTTGGAAGAGGTCGAGCTTCGTCCTGGTCGTAGCCGACGGGATCCAGGCCTTGGA
CAAGGCCATCTCCCTCGCCGAACTTCACGTGGGAAGGCAGGGCTGCCTGGTCCACCTCAAGCGCCGCGCGACCAAGGAGGAAAGGGAGGCTTTAGACGCG
ATCACCTCGTCGGCCGAGCTCGGAGAGATCAAGCCCGAGACCAACCCAACCCTTCTAAGCTACCTCGTTGCGAGCAAGGAGCTCTGGAAATGGCTCAAGA
CCAACAACCTGGTCGAGTCCTTCAACTCGCTCCTGGAGAGGAGGAGGTTCGGGTCGTTTCACAGTCCCTGGAGGATACTCCAGATCGCGCGGGCCATAGC
CCTCTACTACAACCTATTGACCTATTTTCTCACTATTGTAATAATATTACAATCATCTTCATTCCTCCCAATTCCTCAGAAATATATCCAATAATTTATA
CATTGAATAAGTGTAATTAAGAGTCAGGAAATACAATTCGCAATGGACTCCTGAGCCGCCC
GAGGTAATATCATGGAACTCTTAACTGTTAACGAGGTAGCCCTCTACGGCGTTAAGCTAAGGGAGCTCGTAGAGGGACCCGGACAGAGCTCGACCCTCAC
GCTCGTCCCCAAGATATTACCCGATGATGCCCTATTAAACAAATCGGTCCCGGAGATCGAGAGGATGGCCTTGGAGGAGGCGGAGAGGGTGAGCCCCAAC
TACAGGAGGGGTAAGGAGGTGAAGAGGAAGGGTTACGCGAGGTACAGGTTCCTTAAGGGGTTTAGGATTGTGATGGTGGGAAGGGAGATGAGGTACGAGC
TGGAGTGGATCTCGGTGAGGCTTCCCGTGCTTTACTGTGAGGGGAGAGTGAGGACGCAGGTTGAGGAGACTCTCCTGAGGGAGGAAAGGAAGGTATTCAT
GGCCTTGATGGCGGTCTACTCGGTGAAGGGTGGTAAGCTCAACGCAAAGATCTGGATGCCCGAGATTGAAATTGGCGGTGACTTCAGGTACGTTATAGTT
GACGGGAAGTACGTGAAGCTTAAGAGGCGAAAGGCTGTCCTCCTGGTGGCCATTGGCGTGACCCAGGAAGGAAGGAGGGCGGTACTCGAGGTCATCGTAA
GCGAGGCTGAGGACACCATGGCCTATTGGAGTCTCCTGGTCAGGGTTTGGAAGAGGTCGAGCTTCGTCCTGGTCGTAGCCGACGGGATCCAGGCCTTGGA
CAAGGCCATCTCCCTCGCCGAACTTCACGTGGGAAGGCAGGGCTGCCTGGTCCACCTCAAGCGCCGCGCGACCAAGGAGGAAAGGGAGGCTTTAGACGCG
ATCACCTCGTCGGCCGAGCTCGGAGAGATCAAGCCCGAGACCAACCCAACCCTTCTAAGCTACCTCGTTGCGAGCAAGGAGCTCTGGAAATGGCTCAAGA
CCAACAACCTGGTCGAGTCCTTCAACTCGCTCCTGGAGAGGAGGAGGTTCGGGTCGTTTCACAGTCCCTGGAGGATACTCCAGATCGCGCGGGCCATAGC
CCTCTACTACAACCTATTGACCTATTTTCTCACTATTGTAATAATATTACAATCATCTTCATTCCTCCCAATTCCTCAGAAATATATCCAATAATTTATA
CATTGAATAAGTGTAATTAAGAGTCAGGAAATACAATTCGCAATGGACTCCTGAGCCGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1080 bp | 360 aa | 112 | 1191 | + | No |
Chemistry : DDE
ORF sequence :
MELLTVNEVALYGVKLRELVEGPGQSSTLTLVPKILPDDALLNKSVPEIERMALEEAERVSPNYRRGKEVKRKGYARYRFLKGFRIVMVGREMRYELEWI
SVRLPVLYCEGRVRTQVEETLLREERKVFMALMAVYSVKGGKLNAKIWMPEIEIGGDFRYVIVDGKYVKLKRRKAVLLVAIGVTQEGRRAVLEVIVSEAE
DTMAYWSLLVRVWKRSSFVLVVADGIQALDKAISLAELHVGRQGCLVHLKRRATKEEREALDAITSSAELGEIKPETNPTLLSYLVASKELWKWLKTNNL
VESFNSLLERRRFGSFHSPWRILQIARAIALYYNLLTYFLTIVIILQSSSFLPIPQKYIQ
SVRLPVLYCEGRVRTQVEETLLREERKVFMALMAVYSVKGGKLNAKIWMPEIEIGGDFRYVIVDGKYVKLKRRKAVLLVAIGVTQEGRRAVLEVIVSEAE
DTMAYWSLLVRVWKRSSFVLVVADGIQALDKAISLAELHVGRQGCLVHLKRRATKEEREALDAITSSAELGEIKPETNPTLLSYLVASKELWKWLKTNNL
VESFNSLLERRRFGSFHSPWRILQIARAIALYYNLLTYFLTIVIILQSSSFLPIPQKYIQ
Blast result :
Comments
ISC1250 is 48% aa similar to IS905A
References
[1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,
Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De
Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,
Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,
Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840
Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De
Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,
Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,
Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A.,
Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840