ISC1205

  • Family ISNCY
  • Group ISC1217
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY671946 ND Sulfolobus sp.
Sulfolobus sp. L00 24
DNA section
IS Length : 1205 bp

Ends


IR Length : 17/18

IRL : TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGCTCACAGTACTACCG
IRR : TAGCAGTTGTCCTACTTTAACGCAGCTTAAAGATTTTCATCAAACCCAGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGCTCACAGTACTACCGATAAAGTTTTTAGATTTACGTTTAGTTGATTAAAAACTGTGAAGTCCGAG
AAAGAGCTGGACATTGCAAGGACCGAGTTCATCAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGAAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGAGACTACCTTGAAGCGTTAAGCAAAGTGATAATTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTCGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATTTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGTGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGATCCTCAAAGAGCGGTTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCGGAATTGAAGTCTAATAGGAGGCTCATCAGGGTTAGGCCTTTGGAGGGAGGGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGATCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAATTT
GTACACTACTGACCTTAACTTGAGCGATGAGGAGATAGAGGCAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATTTACTCCTCTTCGTGATGGTGGTCAACGCGGCCAGAGACTTGGTCACGTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCGCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGGACAAC
TGCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa891189+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKSEKELDIARTEFIKSFNYLIGTLRMNGLRRKVAVGLALMTLIGGRASIRNASITFKLNYANLLKTLENLENTWRDYLEALSKVIIGPVVVIIDDTFDH
KLYSRVEGIASKYGNYFAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEILKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLIRVRPLEGGKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYTTDLNLSDEEIEATWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMVVNAARDLVTSLNLKSVEELRRFVEIRLGGALGLMKIFKLR

 

Blast result :
Comments
ISC1205 is 52% aa similar to ISC1217.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325