ISC1205
- Family ISNCY
- Group ISC1217
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY671946 | ND | Sulfolobus sp. | Sulfolobus sp. L00 24 |
DNA section
IS Length : 1205 bp
Ends
IR Length : 17/18
IRL : TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGCTCACAGTACTACCG
IRR : TAGCAGTTGTCCTACTTTAACGCAGCTTAAAGATTTTCATCAAACCCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGCTCACAGTACTACCGATAAAGTTTTTAGATTTACGTTTAGTTGATTAAAAACTGTGAAGTCCGAG
AAAGAGCTGGACATTGCAAGGACCGAGTTCATCAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGAAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGAGACTACCTTGAAGCGTTAAGCAAAGTGATAATTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTCGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATTTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGTGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGATCCTCAAAGAGCGGTTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCGGAATTGAAGTCTAATAGGAGGCTCATCAGGGTTAGGCCTTTGGAGGGAGGGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGATCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAATTT
GTACACTACTGACCTTAACTTGAGCGATGAGGAGATAGAGGCAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATTTACTCCTCTTCGTGATGGTGGTCAACGCGGCCAGAGACTTGGTCACGTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCGCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGGACAAC
TGCTA
AAAGAGCTGGACATTGCAAGGACCGAGTTCATCAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGAAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGAGACTACCTTGAAGCGTTAAGCAAAGTGATAATTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTCGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATTTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGTGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGATCCTCAAAGAGCGGTTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCGGAATTGAAGTCTAATAGGAGGCTCATCAGGGTTAGGCCTTTGGAGGGAGGGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGATCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAATTT
GTACACTACTGACCTTAACTTGAGCGATGAGGAGATAGAGGCAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATTTACTCCTCTTCGTGATGGTGGTCAACGCGGCCAGAGACTTGGTCACGTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCGCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGGACAAC
TGCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 89 | 1189 | + | No |
Chemistry : Unknow
ORF sequence :
MKSEKELDIARTEFIKSFNYLIGTLRMNGLRRKVAVGLALMTLIGGRASIRNASITFKLNYANLLKTLENLENTWRDYLEALSKVIIGPVVVIIDDTFDH
KLYSRVEGIASKYGNYFAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEILKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLIRVRPLEGGKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYTTDLNLSDEEIEATWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMVVNAARDLVTSLNLKSVEELRRFVEIRLGGALGLMKIFKLR
KLYSRVEGIASKYGNYFAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEILKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLIRVRPLEGGKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYTTDLNLSDEEIEATWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMVVNAARDLVTSLNLKSVEELRRFVEIRLGGALGLMKIFKLR
Blast result :
Comments
ISC1205 is 52% aa similar to ISC1217.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325