ISSto10
- Family ISNCY
- Group ISC1217
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii |
DNA section
IS Length : 1145 bp
Ends
IR Length : 14/23
IRL : TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTT
IRR : TAGCATTTTACGTCTTTTTCCTTCTCTTAAACAGTTTCTTAATCCCACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACTACATCAAT | AAGTGGT | TTATAATGCATTTTAAAT | 7 |
DNA sequence
TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTTTAAAAATTAGCCAAACAAAATATCGGATGAATACAAACTCATTACTCCAA
GAGTATTACAAGACACTTCAAGAAGCATTACAACAAATCTTCACAGCCTTGACTAGCGTGAGAAAAGACACACTAACAAGACTAGTACTAGGAGGAGTTA
TGGGTGGGACAGCAACAGAAATAGCACAAGCAGTAGACATGGACTACGAGACAGTACTAAAAAACCTTGACAAATTGGCAAACATAAACCTGATCAAAAT
AGTAAAAGAAATAGTAAAAGACCACCCAGTACAACTAATAATAGACGACACACACAACCACAAAGCAAGAGCACTACCAGTATCAAGAAACGGAACACAA
GCCTTTTACTGCAGAGAACACAAGAGATACGAGCCAGCAATACAACTCCTCCTAATAACACTAAAAGACTTGAGGACAAACGAGGCCTACATAGTAACAA
TAATACCATACATACCACAAAAAGTTGCCGAAATACTCAAGGAAAGGGGAGAAAAAGCAGAATACAAAACAAAAATCCAACTATACCTAGAAACACTACC
AACAATCCTAAACGAGTACAACGTTACCACCATCTCATTCGACTCATGGTACGTAAACTCAAAAACCCTACTACCTAACACTACCGGGGAACTCAAGGCA
AACTCACGTGTTGTCGAGGGTGGCAGACATGTGCCAGTTGCCGAGTTCCCCGAAGGGGAATACCTAGTAGAATACCTAGGTACCCCCATAAAACTACTCG
TAATAGACAATTATAAAGGCATGGGAAAAAGATACTTCTTCTCGACCAACACAAATGACACACCAGAAGACATAATAACAACATGGGAAAACCGTTGGGA
TATTGAAGTAGTAATTAGGGAGCTAAAGGCTCTAGGCTTAGAGAAGAGCTCTTTCCTCACATGGGTTAGGAACAAGGGTTTCATAACCTTGAAATCCCTC
TCCCTCCTCTTAGTTCTCTCATTTAAGTATTCTCTTGGCTTAAGCTTGGGAGCCAAGAGAATATCGAGGATGATAAAAAGTATTTATCAGTCTTTGGGTG
GGATTAAGAAACTGTTTAAGAGAAGGAAAAAGACGTAAAATGCTA
GAGTATTACAAGACACTTCAAGAAGCATTACAACAAATCTTCACAGCCTTGACTAGCGTGAGAAAAGACACACTAACAAGACTAGTACTAGGAGGAGTTA
TGGGTGGGACAGCAACAGAAATAGCACAAGCAGTAGACATGGACTACGAGACAGTACTAAAAAACCTTGACAAATTGGCAAACATAAACCTGATCAAAAT
AGTAAAAGAAATAGTAAAAGACCACCCAGTACAACTAATAATAGACGACACACACAACCACAAAGCAAGAGCACTACCAGTATCAAGAAACGGAACACAA
GCCTTTTACTGCAGAGAACACAAGAGATACGAGCCAGCAATACAACTCCTCCTAATAACACTAAAAGACTTGAGGACAAACGAGGCCTACATAGTAACAA
TAATACCATACATACCACAAAAAGTTGCCGAAATACTCAAGGAAAGGGGAGAAAAAGCAGAATACAAAACAAAAATCCAACTATACCTAGAAACACTACC
AACAATCCTAAACGAGTACAACGTTACCACCATCTCATTCGACTCATGGTACGTAAACTCAAAAACCCTACTACCTAACACTACCGGGGAACTCAAGGCA
AACTCACGTGTTGTCGAGGGTGGCAGACATGTGCCAGTTGCCGAGTTCCCCGAAGGGGAATACCTAGTAGAATACCTAGGTACCCCCATAAAACTACTCG
TAATAGACAATTATAAAGGCATGGGAAAAAGATACTTCTTCTCGACCAACACAAATGACACACCAGAAGACATAATAACAACATGGGAAAACCGTTGGGA
TATTGAAGTAGTAATTAGGGAGCTAAAGGCTCTAGGCTTAGAGAAGAGCTCTTTCCTCACATGGGTTAGGAACAAGGGTTTCATAACCTTGAAATCCCTC
TCCCTCCTCTTAGTTCTCTCATTTAAGTATTCTCTTGGCTTAAGCTTGGGAGCCAAGAGAATATCGAGGATGATAAAAAGTATTTATCAGTCTTTGGGTG
GGATTAAGAAACTGTTTAAGAGAAGGAAAAAGACGTAAAATGCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1062 bp | 353 aa | 77 | 1138 | + | No |
Chemistry : Unknow
ORF sequence :
MNTNSLLQEYYKTLQEALQQIFTALTSVRKDTLTRLVLGGVMGGTATEIAQAVDMDYETVLKNLDKLANINLIKIVKEIVKDHPVQLIIDDTHNHKARAL
PVSRNGTQAFYCREHKRYEPAIQLLLITLKDLRTNEAYIVTIIPYIPQKVAEILKERGEKAEYKTKIQLYLETLPTILNEYNVTTISFDSWYVNSKTLLP
NTTGELKANSRVVEGGRHVPVAEFPEGEYLVEYLGTPIKLLVIDNYKGMGKRYFFSTNTNDTPEDIITTWENRWDIEVVIRELKALGLEKSSFLTWVRNK
GFITLKSLSLLLVLSFKYSLGLSLGAKRISRMIKSIYQSLGGIKKLFKRRKKT
PVSRNGTQAFYCREHKRYEPAIQLLLITLKDLRTNEAYIVTIIPYIPQKVAEILKERGEKAEYKTKIQLYLETLPTILNEYNVTTISFDSWYVNSKTLLP
NTTGELKANSRVVEGGRHVPVAEFPEGEYLVEYLGTPIKLLVIDNYKGMGKRYFFSTNTNDTPEDIITTWENRWDIEVVIRELKALGLEKSSFLTWVRNK
GFITLKSLSLLLVLSFKYSLGLSLGAKRISRMIKSIYQSLGGIKKLFKRRKKT
Blast result :
Comments
ISSto10 is 81% aa similar to ISC1217. There are 2 complete copies and some partial copies in Sulfolobus tokodaii genome.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140