ISSto10

  • Family ISNCY
  • Group ISC1217
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii
DNA section
IS Length : 1145 bp

Ends


IR Length : 14/23

IRL : TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTT
IRR : TAGCATTTTACGTCTTTTTCCTTCTCTTAAACAGTTTCTTAATCCCACCC

Insertion site


Left flankDirect repeatRight flankDR Length
TAACTACATCAATAAGTGGTTTATAATGCATTTTAAAT7

DNA sequence

TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTTTAAAAATTAGCCAAACAAAATATCGGATGAATACAAACTCATTACTCCAA
GAGTATTACAAGACACTTCAAGAAGCATTACAACAAATCTTCACAGCCTTGACTAGCGTGAGAAAAGACACACTAACAAGACTAGTACTAGGAGGAGTTA
TGGGTGGGACAGCAACAGAAATAGCACAAGCAGTAGACATGGACTACGAGACAGTACTAAAAAACCTTGACAAATTGGCAAACATAAACCTGATCAAAAT
AGTAAAAGAAATAGTAAAAGACCACCCAGTACAACTAATAATAGACGACACACACAACCACAAAGCAAGAGCACTACCAGTATCAAGAAACGGAACACAA
GCCTTTTACTGCAGAGAACACAAGAGATACGAGCCAGCAATACAACTCCTCCTAATAACACTAAAAGACTTGAGGACAAACGAGGCCTACATAGTAACAA
TAATACCATACATACCACAAAAAGTTGCCGAAATACTCAAGGAAAGGGGAGAAAAAGCAGAATACAAAACAAAAATCCAACTATACCTAGAAACACTACC
AACAATCCTAAACGAGTACAACGTTACCACCATCTCATTCGACTCATGGTACGTAAACTCAAAAACCCTACTACCTAACACTACCGGGGAACTCAAGGCA
AACTCACGTGTTGTCGAGGGTGGCAGACATGTGCCAGTTGCCGAGTTCCCCGAAGGGGAATACCTAGTAGAATACCTAGGTACCCCCATAAAACTACTCG
TAATAGACAATTATAAAGGCATGGGAAAAAGATACTTCTTCTCGACCAACACAAATGACACACCAGAAGACATAATAACAACATGGGAAAACCGTTGGGA
TATTGAAGTAGTAATTAGGGAGCTAAAGGCTCTAGGCTTAGAGAAGAGCTCTTTCCTCACATGGGTTAGGAACAAGGGTTTCATAACCTTGAAATCCCTC
TCCCTCCTCTTAGTTCTCTCATTTAAGTATTCTCTTGGCTTAAGCTTGGGAGCCAAGAGAATATCGAGGATGATAAAAAGTATTTATCAGTCTTTGGGTG
GGATTAAGAAACTGTTTAAGAGAAGGAAAAAGACGTAAAATGCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1062 bp353 aa771138+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNTNSLLQEYYKTLQEALQQIFTALTSVRKDTLTRLVLGGVMGGTATEIAQAVDMDYETVLKNLDKLANINLIKIVKEIVKDHPVQLIIDDTHNHKARAL
PVSRNGTQAFYCREHKRYEPAIQLLLITLKDLRTNEAYIVTIIPYIPQKVAEILKERGEKAEYKTKIQLYLETLPTILNEYNVTTISFDSWYVNSKTLLP
NTTGELKANSRVVEGGRHVPVAEFPEGEYLVEYLGTPIKLLVIDNYKGMGKRYFFSTNTNDTPEDIITTWENRWDIEVVIRELKALGLEKSSFLTWVRNK
GFITLKSLSLLLVLSFKYSLGLSLGAKRISRMIKSIYQSLGGIKKLFKRRKKT

 

Blast result :
Comments
ISSto10 is 81% aa similar to ISC1217. There are 2 complete copies and some partial copies in Sulfolobus tokodaii genome.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140