ISNph3

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007427 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1449 bp

Ends


IR Length : 26/27

IRL : GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGACTCCCGTGAG
IRR : GGTCGTGTCACAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAATTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TCTCAATTGTTTGACTTTTTTGCT0

DNA sequence

GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGACTCCCGTGAGGAACGGGACGCCTCTGGTGTCCATCCCAAGAGGTGTCCCATGCACGCCAC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACCACAAAACGATACCGCTGGCCACGCTTGCCGAGTCCATTACCGACCAAAACATCGAATCGGTCCTT
CTCGAAGGACTCGTCGAAAGCCTCGACGCGGCCCGCGTCGAGGCGCTCTGTGGCGAAAAACACACCCACGGCAACGGCGAAAACCGGTTCCAACGAGCCG
GCACTGATACTCGCACAGCCGTCACAACCGCCGGTGAACACGAGCTCGATCTTCATTACGTCAAAGACACAGCTGCTGATCACGACGAATCCAGTTACTT
CCGGCCCGTCGAAGACGTTCTCGGCTTCGACGGCCAAAATCGCTATCAACAGGACATTGCCGCCAAAAGCGTCGATCTCGCTACCTCACTCAGTTATCGT
GATGCGGCAGATCACGGCGACGGCATCTTCGAGAGGATGCCGTCGCCGACCACCATCAACCGTCGCACCAAAGAATACGGCACCAAGCTCAAGCAGTTTC
TTCCCGACTGTGTCGCTGACACCGACGCTGACGCCGTTATTCCTGACGGCACACAGTGTCACAGCCAAGACGAAGACCGCTCGTACCACTCTGTCCAAGC
CACGCTTGGCGAAAACACCGCCGAGGAGTCACGCTCTCTGCTCGATCTCTCGGTCAACGCTGACTGGGACGAGACAGCCGCCGAACTCGAAGACATCGGC
GCAGTCACTGACGACGCGACGGTCGTCAGTGACGGCGATAGCGGCATTGTCACAGCCTTTACGGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TTGGCCGAACGCTTGACTACAACCTCTGGGACGACGGTGTCTTTTCGTTGGATCGGCGTAACCAGATCGTTTCAGAAGTAATCGAAGATGTGTTCCATCT
GAAGAACTCGGTCATCAAGCACCGGCCAGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCACGCGAACGACCGAGCGTATCGAGAAGACAGCGTGGCAG
CTGAATCAGTACGGGTCGGAGAAGGCGGCGAGGTATCTTCGGCGGTGGCTGCCGTCGATAGTGAGATTTGCCAAGCAGGCCATCGAGGGGTTCGAGGTGC
CATGGACCTCGAACCCCGTCGAACGACTGATGGGCGAAGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAAAGGAAGGATTAGAGGCGATCCT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCATCATACTACCAGTGGTTCCTCGACGAACTGCTCCAGCGACCGACCAAAACAGCAATGAGTTGTGACCTC
TCAATTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGTGACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa901430+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHATIDVRLTVSIDDHKTIPLATLAESITDQNIESVLLEGLVESLDAARVEALCGEKHTHGNGENRFQRAGTDTRTAVTTAGEHELDLHYVKDTAADHDE
SSYFRPVEDVLGFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGIFERMPSPTTINRRTKEYGTKLKQFLPDCVADTDADAVIPDGTQCHSQDEDRSYH
SVQATLGENTAEESRSLLDLSVNADWDETAAELEDIGAVTDDATVVSDGDSGIVTAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNQIVSEVIED
VFHLKNSVIKHRPEEEFAAIRERITRTTERIEKTAWQLNQYGSEKAARYLRRWLPSIVRFAKQAIEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTKEGL
EAILQLRLVKYADPSYYQWFLDELLQRPTKTAMSCDLSIESTRGKL

 

Blast result :
Comments
ISNph3 is 95% aa similar to ISH6.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J.
and Oesterhelt,D. (2005) Genome Res. In press