ISNph3
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007427 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 plasmid PL131 |
DNA section
IS Length : 1449 bp
Ends
IR Length : 26/27
IRL : GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGACTCCCGTGAG
IRR : GGTCGTGTCACAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAATTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTCAATTGTTT | GACTTTTTTGCT | 0 |
DNA sequence
GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGACTCCCGTGAGGAACGGGACGCCTCTGGTGTCCATCCCAAGAGGTGTCCCATGCACGCCAC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACCACAAAACGATACCGCTGGCCACGCTTGCCGAGTCCATTACCGACCAAAACATCGAATCGGTCCTT
CTCGAAGGACTCGTCGAAAGCCTCGACGCGGCCCGCGTCGAGGCGCTCTGTGGCGAAAAACACACCCACGGCAACGGCGAAAACCGGTTCCAACGAGCCG
GCACTGATACTCGCACAGCCGTCACAACCGCCGGTGAACACGAGCTCGATCTTCATTACGTCAAAGACACAGCTGCTGATCACGACGAATCCAGTTACTT
CCGGCCCGTCGAAGACGTTCTCGGCTTCGACGGCCAAAATCGCTATCAACAGGACATTGCCGCCAAAAGCGTCGATCTCGCTACCTCACTCAGTTATCGT
GATGCGGCAGATCACGGCGACGGCATCTTCGAGAGGATGCCGTCGCCGACCACCATCAACCGTCGCACCAAAGAATACGGCACCAAGCTCAAGCAGTTTC
TTCCCGACTGTGTCGCTGACACCGACGCTGACGCCGTTATTCCTGACGGCACACAGTGTCACAGCCAAGACGAAGACCGCTCGTACCACTCTGTCCAAGC
CACGCTTGGCGAAAACACCGCCGAGGAGTCACGCTCTCTGCTCGATCTCTCGGTCAACGCTGACTGGGACGAGACAGCCGCCGAACTCGAAGACATCGGC
GCAGTCACTGACGACGCGACGGTCGTCAGTGACGGCGATAGCGGCATTGTCACAGCCTTTACGGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TTGGCCGAACGCTTGACTACAACCTCTGGGACGACGGTGTCTTTTCGTTGGATCGGCGTAACCAGATCGTTTCAGAAGTAATCGAAGATGTGTTCCATCT
GAAGAACTCGGTCATCAAGCACCGGCCAGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCACGCGAACGACCGAGCGTATCGAGAAGACAGCGTGGCAG
CTGAATCAGTACGGGTCGGAGAAGGCGGCGAGGTATCTTCGGCGGTGGCTGCCGTCGATAGTGAGATTTGCCAAGCAGGCCATCGAGGGGTTCGAGGTGC
CATGGACCTCGAACCCCGTCGAACGACTGATGGGCGAAGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAAAGGAAGGATTAGAGGCGATCCT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCATCATACTACCAGTGGTTCCTCGACGAACTGCTCCAGCGACCGACCAAAACAGCAATGAGTTGTGACCTC
TCAATTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGTGACACGACC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACCACAAAACGATACCGCTGGCCACGCTTGCCGAGTCCATTACCGACCAAAACATCGAATCGGTCCTT
CTCGAAGGACTCGTCGAAAGCCTCGACGCGGCCCGCGTCGAGGCGCTCTGTGGCGAAAAACACACCCACGGCAACGGCGAAAACCGGTTCCAACGAGCCG
GCACTGATACTCGCACAGCCGTCACAACCGCCGGTGAACACGAGCTCGATCTTCATTACGTCAAAGACACAGCTGCTGATCACGACGAATCCAGTTACTT
CCGGCCCGTCGAAGACGTTCTCGGCTTCGACGGCCAAAATCGCTATCAACAGGACATTGCCGCCAAAAGCGTCGATCTCGCTACCTCACTCAGTTATCGT
GATGCGGCAGATCACGGCGACGGCATCTTCGAGAGGATGCCGTCGCCGACCACCATCAACCGTCGCACCAAAGAATACGGCACCAAGCTCAAGCAGTTTC
TTCCCGACTGTGTCGCTGACACCGACGCTGACGCCGTTATTCCTGACGGCACACAGTGTCACAGCCAAGACGAAGACCGCTCGTACCACTCTGTCCAAGC
CACGCTTGGCGAAAACACCGCCGAGGAGTCACGCTCTCTGCTCGATCTCTCGGTCAACGCTGACTGGGACGAGACAGCCGCCGAACTCGAAGACATCGGC
GCAGTCACTGACGACGCGACGGTCGTCAGTGACGGCGATAGCGGCATTGTCACAGCCTTTACGGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TTGGCCGAACGCTTGACTACAACCTCTGGGACGACGGTGTCTTTTCGTTGGATCGGCGTAACCAGATCGTTTCAGAAGTAATCGAAGATGTGTTCCATCT
GAAGAACTCGGTCATCAAGCACCGGCCAGAAGAGGAGTTCGCGGCGATCCGCGAGCGGATCACGCGAACGACCGAGCGTATCGAGAAGACAGCGTGGCAG
CTGAATCAGTACGGGTCGGAGAAGGCGGCGAGGTATCTTCGGCGGTGGCTGCCGTCGATAGTGAGATTTGCCAAGCAGGCCATCGAGGGGTTCGAGGTGC
CATGGACCTCGAACCCCGTCGAACGACTGATGGGCGAAGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAAAGGAAGGATTAGAGGCGATCCT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCATCATACTACCAGTGGTTCCTCGACGAACTGCTCCAGCGACCGACCAAAACAGCAATGAGTTGTGACCTC
TCAATTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGTGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 90 | 1430 | + | No |
Chemistry : DDE
ORF sequence :
MHATIDVRLTVSIDDHKTIPLATLAESITDQNIESVLLEGLVESLDAARVEALCGEKHTHGNGENRFQRAGTDTRTAVTTAGEHELDLHYVKDTAADHDE
SSYFRPVEDVLGFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGIFERMPSPTTINRRTKEYGTKLKQFLPDCVADTDADAVIPDGTQCHSQDEDRSYH
SVQATLGENTAEESRSLLDLSVNADWDETAAELEDIGAVTDDATVVSDGDSGIVTAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNQIVSEVIED
VFHLKNSVIKHRPEEEFAAIRERITRTTERIEKTAWQLNQYGSEKAARYLRRWLPSIVRFAKQAIEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTKEGL
EAILQLRLVKYADPSYYQWFLDELLQRPTKTAMSCDLSIESTRGKL
SSYFRPVEDVLGFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGIFERMPSPTTINRRTKEYGTKLKQFLPDCVADTDADAVIPDGTQCHSQDEDRSYH
SVQATLGENTAEESRSLLDLSVNADWDETAAELEDIGAVTDDATVVSDGDSGIVTAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNQIVSEVIED
VFHLKNSVIKHRPEEEFAAIRERITRTTERIEKTAWQLNQYGSEKAARYLRRWLPSIVRFAKQAIEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTKEGL
EAILQLRLVKYADPSYYQWFLDELLQRPTKTAMSCDLSIESTRGKL
Blast result :
Comments
ISNph3 is 95% aa similar to ISH6.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J.
and Oesterhelt,D. (2005) Genome Res. In press
and Oesterhelt,D. (2005) Genome Res. In press