ISHma5
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006393 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 plasmid pNG500 |
DNA section
IS Length : 1449 bp
Ends
IR Length : 23/27
IRL : GGTCGTGTCGCAAAGCCCTCTAGAGTTCAGTAGCAGCTGGCTCCCGTGAG
IRR : GATCGCGTCGCAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAACTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCGTTTTCGAC | AAAATGTT | TACGCTGTCCTGT | 8 |
DNA sequence
GGTCGTGTCGCAAAGCCCTCTAGAGTTCAGTAGCAGCTGGCTCCCGTGAGGAACGGGTCGCCTCTGGTGTCCAACCTGAGAGGTGACCCATGCACGCCAC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTGGCTGAGTTCATCACTGACCAGAACGTCGAGTCAGTTCTT
CTCGAAGGACTGGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAACATGCCAACGGCAACGGTCAACAACGATTCCAACGAGCTG
GAACCGATACCCGCACAGCTGTCACAGCCGCCGGTGAGCACGAGTTCTCTCTCCACTACGTCGAGGATACTGACGCTGACCACGACGAAACCAGCTACTT
CCGGCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTACCAGCAGGACATAGCGGCCAAGAGTGTCGATCTCGCCACCTCGCTCAGCTATCGT
GACACTGCTGACCACGGCGACGGCATCCTCTCGGAGATGCCGTCGCCGACCACCATCAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCC
TTCCAGACTGTGTCGCTGATACAGAGGCTGACGCTGTTACTCCTGACGGCACGAAGTGCCACAGCCAAGACGACGACCGCTCGTACCACTCCGTCCAGGC
CACGCTCGGCGAAGATACTGCCGAGGAGTCACGCTCCCTGCTGGATCTCTCGGCGAACGCTGAGTGGGACAAGACAGCAGCCGACCTCGATGACATCGGC
GCAGTTACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTGCGGCTTTTACCGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TCGGCCGAACGCTCGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCAGCGGAACGAGATCGTTTCGGAGGTGATCGACGAGGTGCTCCATCT
GAAGAACTCGGTCGCCAAACACCGTCCAGACGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACTGAGCGTATCGAGAAGACAGCGTGGCAG
TTGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCATCGATCGTGACGTTTGCCGAGCAGGCCGTCGAGGGGTTCGAGGTGC
CGTGGACCTCGAACCCCGTCGAACGGTTGATGGGGGAGGTCAGCAAACGGTGCAAGAACCAGTGGATGCGCTGGACAACGGAGAGATTAGAGGCGATACT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCAGAGTACTACCAATCGTTCCTCGACGAACTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTC
TCAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGATC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTGGCTGAGTTCATCACTGACCAGAACGTCGAGTCAGTTCTT
CTCGAAGGACTGGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAACATGCCAACGGCAACGGTCAACAACGATTCCAACGAGCTG
GAACCGATACCCGCACAGCTGTCACAGCCGCCGGTGAGCACGAGTTCTCTCTCCACTACGTCGAGGATACTGACGCTGACCACGACGAAACCAGCTACTT
CCGGCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTACCAGCAGGACATAGCGGCCAAGAGTGTCGATCTCGCCACCTCGCTCAGCTATCGT
GACACTGCTGACCACGGCGACGGCATCCTCTCGGAGATGCCGTCGCCGACCACCATCAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCC
TTCCAGACTGTGTCGCTGATACAGAGGCTGACGCTGTTACTCCTGACGGCACGAAGTGCCACAGCCAAGACGACGACCGCTCGTACCACTCCGTCCAGGC
CACGCTCGGCGAAGATACTGCCGAGGAGTCACGCTCCCTGCTGGATCTCTCGGCGAACGCTGAGTGGGACAAGACAGCAGCCGACCTCGATGACATCGGC
GCAGTTACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTGCGGCTTTTACCGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TCGGCCGAACGCTCGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCAGCGGAACGAGATCGTTTCGGAGGTGATCGACGAGGTGCTCCATCT
GAAGAACTCGGTCGCCAAACACCGTCCAGACGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACTGAGCGTATCGAGAAGACAGCGTGGCAG
TTGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCATCGATCGTGACGTTTGCCGAGCAGGCCGTCGAGGGGTTCGAGGTGC
CGTGGACCTCGAACCCCGTCGAACGGTTGATGGGGGAGGTCAGCAAACGGTGCAAGAACCAGTGGATGCGCTGGACAACGGAGAGATTAGAGGCGATACT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCAGAGTACTACCAATCGTTCCTCGACGAACTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTC
TCAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 446 aa | 81 | 1430 | + | No |
Chemistry : DDE
ORF sequence :
MHATIDVRLTVSIDDDKTIPLATLAEFITDQNVESVLLEGLVESLDASRVEALCGEKHANGNGQQRFQRAGTDTRTAVTAAGEHEFSLHYVEDTDADHDE
TSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDTADHGDGILSEMPSPTTINRRAREYGSKLKQFLPDCVADTEADAVTPDGTKCHSQDDDRSYH
SVQATLGEDTAEESRSLLDLSANAEWDKTAADLDDIGAVTDDATVVSDADDGIVAAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDQRNEIVSEVIDE
VLHLKNSVAKHRPDEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTERL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL
TSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDTADHGDGILSEMPSPTTINRRAREYGSKLKQFLPDCVADTEADAVTPDGTKCHSQDDDRSYH
SVQATLGEDTAEESRSLLDLSANAEWDKTAADLDDIGAVTDDATVVSDADDGIVAAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDQRNEIVSEVIDE
VLHLKNSVAKHRPDEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTERL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL
Blast result :
Comments
ISHma5 is 97% aa similar to ISH6.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234