ISHma5

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006393 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049 plasmid pNG500
DNA section
IS Length : 1449 bp

Ends


IR Length : 23/27

IRL : GGTCGTGTCGCAAAGCCCTCTAGAGTTCAGTAGCAGCTGGCTCCCGTGAG
IRR : GATCGCGTCGCAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAACTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCGTTTTCGACAAAATGTTTACGCTGTCCTGT8

DNA sequence

GGTCGTGTCGCAAAGCCCTCTAGAGTTCAGTAGCAGCTGGCTCCCGTGAGGAACGGGTCGCCTCTGGTGTCCAACCTGAGAGGTGACCCATGCACGCCAC
AATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTGGCTGAGTTCATCACTGACCAGAACGTCGAGTCAGTTCTT
CTCGAAGGACTGGTCGAGAGCCTCGACGCGAGCCGCGTCGAGGCGCTCTGTGGCGAAAAACATGCCAACGGCAACGGTCAACAACGATTCCAACGAGCTG
GAACCGATACCCGCACAGCTGTCACAGCCGCCGGTGAGCACGAGTTCTCTCTCCACTACGTCGAGGATACTGACGCTGACCACGACGAAACCAGCTACTT
CCGGCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTACCAGCAGGACATAGCGGCCAAGAGTGTCGATCTCGCCACCTCGCTCAGCTATCGT
GACACTGCTGACCACGGCGACGGCATCCTCTCGGAGATGCCGTCGCCGACCACCATCAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCC
TTCCAGACTGTGTCGCTGATACAGAGGCTGACGCTGTTACTCCTGACGGCACGAAGTGCCACAGCCAAGACGACGACCGCTCGTACCACTCCGTCCAGGC
CACGCTCGGCGAAGATACTGCCGAGGAGTCACGCTCCCTGCTGGATCTCTCGGCGAACGCTGAGTGGGACAAGACAGCAGCCGACCTCGATGACATCGGC
GCAGTTACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTGCGGCTTTTACCGACGAACACAGCGATCACCAACTCGATCTCGTCCACG
TCGGCCGAACGCTCGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCAGCGGAACGAGATCGTTTCGGAGGTGATCGACGAGGTGCTCCATCT
GAAGAACTCGGTCGCCAAACACCGTCCAGACGAGGAGTTCGCGGCGATCCGCGAGCGGATCGCGCGAACGACTGAGCGTATCGAGAAGACAGCGTGGCAG
TTGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCATCGATCGTGACGTTTGCCGAGCAGGCCGTCGAGGGGTTCGAGGTGC
CGTGGACCTCGAACCCCGTCGAACGGTTGATGGGGGAGGTCAGCAAACGGTGCAAGAACCAGTGGATGCGCTGGACAACGGAGAGATTAGAGGCGATACT
CCAGCTTCGGCTGGTGAAGTACGCTGATCCAGAGTACTACCAATCGTTCCTCGACGAACTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTC
TCAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1350 bp446 aa811430+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHATIDVRLTVSIDDDKTIPLATLAEFITDQNVESVLLEGLVESLDASRVEALCGEKHANGNGQQRFQRAGTDTRTAVTAAGEHEFSLHYVEDTDADHDE
TSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDTADHGDGILSEMPSPTTINRRAREYGSKLKQFLPDCVADTEADAVTPDGTKCHSQDDDRSYH
SVQATLGEDTAEESRSLLDLSANAEWDKTAADLDDIGAVTDDATVVSDADDGIVAAFTDEHSDHQLDLVHVGRTLDYNLWDDGVFSLDQRNEIVSEVIDE
VLHLKNSVAKHRPDEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTERL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL

 

Blast result :
Comments
ISHma5 is 97% aa similar to ISH6.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234