ISFac3
- Family ISNCY
- Group ISA1214
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AABC04000005 | ND | Ferroplasma acidarmanus | Ferroplasma acidarmanus |
DNA section
IS Length : 1270 bp
Ends
IR Length : 17
IRL : GGGTGTGGGACACTATTATTCGTCCCTGGTTATTACAATGTAAACCCTTT
IRR : GGGTGTGGGACACTATTCTAATACCTCCCCATATTGAATAAATTGTGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCCGAAGAG | TGCCTGGGG | AAATAGTTAA | 9 |
DNA sequence
GGGTGTGGGACACTATTATTCGTCCCTGGTTATTACAATGTAAACCCTTTTGCCGAGAAATTCCTTAGGGCAATCCACCTTTGCACCCGATCCGAACTTT
GTTACTTTCCTCTCTATGAATCCATATATTCCTTTTATAGAGACCTCTGTTGTCTCATGTATTTCCACTTTTCCCATAGTAATGTATATATACATTGTAT
ATATATCTATCTATGGGTCTTGTCAGGAGTGAGGACATACAGTATAAACTTGAGGAGATAAACAATATACTGGGGAAGAAGTATGTACAGGAACATCCGG
AAAAGGGGAGAAACTGGAGAACATACGAATCCGAGTTTTCACGGAGAATTAAAACTGCAATGAAGGAACTTGATCCCCTTATTGAAAAAGCCGTATCCAT
TATGCATATTGCTAAAAGGCCAGGGCATCCACATTCATTATTACTTGCCCAGAGGGTGAAATTAATACTTATAAAACAGCTTGTTGGCGAATCAAACAGG
ATGTTTGTTAATATGCTCGATATATTTTCTATGCTTTCAGGCATAGATGTATCATATAAAACAATAGAAAGGCTATATTCAGACAATGAAGTTGTAATGG
CCATATTCAATCTCCATGTATTGTTACTGAAGAATAAGAATATTGCAAATTCAGATGCAACAGGCGATGGCACGGGCTATTCATTAACAGTAAAGAAGAA
CTACGAATCCTATGCACAGAGGTTGAAAGACCTTGCAAAGGAGAATAAAGAAATTGGAAAGGAAGAACATAAGGATAAAAAATCAAAAGGGCATAGAAAA
AGATTGTTTGCATATTCCTTTTCCATTATGGATTTAAGGACAAGGATGTATATAGCCTCCGGAACAAGCATGAAATCTGAAAGAAATGCATATGACAATG
CAATGAGGATTGTCAACAAAATAGGTATTAATATAGATTCTATAAGGCTTGACAGGTATTATTCATCACCTTCATATGTAGATAAATTAGGGGATACAAA
GGTATACATTATACCTAAGAAGAATTCTACATTGCACGGTTCACATAAATGGAAATCTATAATAAGGGAATTTCTCAATGACACTATGAATTACCTTGAA
AAGTACCATAAAAGAAGCAATTCAGAATCAGGATTTGCAGCAGACAAGAAGATGCTGGGATGGAATATGGCACAGAGAAGGGATGACAGGATAGGCAATG
CACTGTTATGCACCAATGTCTGGCACAATTTATTCAATATGGGGAGGTATTAGAATAGTGTCCCACACCC
GTTACTTTCCTCTCTATGAATCCATATATTCCTTTTATAGAGACCTCTGTTGTCTCATGTATTTCCACTTTTCCCATAGTAATGTATATATACATTGTAT
ATATATCTATCTATGGGTCTTGTCAGGAGTGAGGACATACAGTATAAACTTGAGGAGATAAACAATATACTGGGGAAGAAGTATGTACAGGAACATCCGG
AAAAGGGGAGAAACTGGAGAACATACGAATCCGAGTTTTCACGGAGAATTAAAACTGCAATGAAGGAACTTGATCCCCTTATTGAAAAAGCCGTATCCAT
TATGCATATTGCTAAAAGGCCAGGGCATCCACATTCATTATTACTTGCCCAGAGGGTGAAATTAATACTTATAAAACAGCTTGTTGGCGAATCAAACAGG
ATGTTTGTTAATATGCTCGATATATTTTCTATGCTTTCAGGCATAGATGTATCATATAAAACAATAGAAAGGCTATATTCAGACAATGAAGTTGTAATGG
CCATATTCAATCTCCATGTATTGTTACTGAAGAATAAGAATATTGCAAATTCAGATGCAACAGGCGATGGCACGGGCTATTCATTAACAGTAAAGAAGAA
CTACGAATCCTATGCACAGAGGTTGAAAGACCTTGCAAAGGAGAATAAAGAAATTGGAAAGGAAGAACATAAGGATAAAAAATCAAAAGGGCATAGAAAA
AGATTGTTTGCATATTCCTTTTCCATTATGGATTTAAGGACAAGGATGTATATAGCCTCCGGAACAAGCATGAAATCTGAAAGAAATGCATATGACAATG
CAATGAGGATTGTCAACAAAATAGGTATTAATATAGATTCTATAAGGCTTGACAGGTATTATTCATCACCTTCATATGTAGATAAATTAGGGGATACAAA
GGTATACATTATACCTAAGAAGAATTCTACATTGCACGGTTCACATAAATGGAAATCTATAATAAGGGAATTTCTCAATGACACTATGAATTACCTTGAA
AAGTACCATAAAAGAAGCAATTCAGAATCAGGATTTGCAGCAGACAAGAAGATGCTGGGATGGAATATGGCACAGAGAAGGGATGACAGGATAGGCAATG
CACTGTTATGCACCAATGTCTGGCACAATTTATTCAATATGGGGAGGTATTAGAATAGTGTCCCACACCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
162 bp | 53 aa | 16 | 177 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGKVEIHETTEVSIKGIYGFIERKVTKFGSGAKVDCPKEFLGKRVYIVITRDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 346 aa | 213 | 1250 | + | No |
Chemistry : Unknow
ORF sequence :
MGLVRSEDIQYKLEEINNILGKKYVQEHPEKGRNWRTYESEFSRRIKTAMKELDPLIEKAVSIMHIAKRPGHPHSLLLAQRVKLILIKQLVGESNRMFVN
MLDIFSMLSGIDVSYKTIERLYSDNEVVMAIFNLHVLLLKNKNIANSDATGDGTGYSLTVKKNYESYAQRLKDLAKENKEIGKEEHKDKKSKGHRKRLFA
YSFSIMDLRTRMYIASGTSMKSERNAYDNAMRIVNKIGINIDSIRLDRYYSSPSYVDKLGDTKVYIIPKKNSTLHGSHKWKSIIREFLNDTMNYLEKYHK
RSNSESGFAADKKMLGWNMAQRRDDRIGNALLCTNVWHNLFNMGRY
MLDIFSMLSGIDVSYKTIERLYSDNEVVMAIFNLHVLLLKNKNIANSDATGDGTGYSLTVKKNYESYAQRLKDLAKENKEIGKEEHKDKKSKGHRKRLFA
YSFSIMDLRTRMYIASGTSMKSERNAYDNAMRIVNKIGINIDSIRLDRYYSSPSYVDKLGDTKVYIIPKKNSTLHGSHKWKSIIREFLNDTMNYLEKYHK
RSNSESGFAADKKMLGWNMAQRRDDRIGNALLCTNVWHNLFNMGRY
Blast result :
Comments
ISFac3 is 67% (ORF1) aa similar to ISMhu3 and 58%(ORF2) aa similar to ISA1214-6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank