ISFac3

  • Family ISNCY
  • Group ISA1214
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AABC04000005 ND Ferroplasma acidarmanus
Ferroplasma acidarmanus
DNA section
IS Length : 1270 bp

Ends


IR Length : 17

IRL : GGGTGTGGGACACTATTATTCGTCCCTGGTTATTACAATGTAAACCCTTT
IRR : GGGTGTGGGACACTATTCTAATACCTCCCCATATTGAATAAATTGTGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATCCGAAGAGTGCCTGGGGAAATAGTTAA9

DNA sequence

GGGTGTGGGACACTATTATTCGTCCCTGGTTATTACAATGTAAACCCTTTTGCCGAGAAATTCCTTAGGGCAATCCACCTTTGCACCCGATCCGAACTTT
GTTACTTTCCTCTCTATGAATCCATATATTCCTTTTATAGAGACCTCTGTTGTCTCATGTATTTCCACTTTTCCCATAGTAATGTATATATACATTGTAT
ATATATCTATCTATGGGTCTTGTCAGGAGTGAGGACATACAGTATAAACTTGAGGAGATAAACAATATACTGGGGAAGAAGTATGTACAGGAACATCCGG
AAAAGGGGAGAAACTGGAGAACATACGAATCCGAGTTTTCACGGAGAATTAAAACTGCAATGAAGGAACTTGATCCCCTTATTGAAAAAGCCGTATCCAT
TATGCATATTGCTAAAAGGCCAGGGCATCCACATTCATTATTACTTGCCCAGAGGGTGAAATTAATACTTATAAAACAGCTTGTTGGCGAATCAAACAGG
ATGTTTGTTAATATGCTCGATATATTTTCTATGCTTTCAGGCATAGATGTATCATATAAAACAATAGAAAGGCTATATTCAGACAATGAAGTTGTAATGG
CCATATTCAATCTCCATGTATTGTTACTGAAGAATAAGAATATTGCAAATTCAGATGCAACAGGCGATGGCACGGGCTATTCATTAACAGTAAAGAAGAA
CTACGAATCCTATGCACAGAGGTTGAAAGACCTTGCAAAGGAGAATAAAGAAATTGGAAAGGAAGAACATAAGGATAAAAAATCAAAAGGGCATAGAAAA
AGATTGTTTGCATATTCCTTTTCCATTATGGATTTAAGGACAAGGATGTATATAGCCTCCGGAACAAGCATGAAATCTGAAAGAAATGCATATGACAATG
CAATGAGGATTGTCAACAAAATAGGTATTAATATAGATTCTATAAGGCTTGACAGGTATTATTCATCACCTTCATATGTAGATAAATTAGGGGATACAAA
GGTATACATTATACCTAAGAAGAATTCTACATTGCACGGTTCACATAAATGGAAATCTATAATAAGGGAATTTCTCAATGACACTATGAATTACCTTGAA
AAGTACCATAAAAGAAGCAATTCAGAATCAGGATTTGCAGCAGACAAGAAGATGCTGGGATGGAATATGGCACAGAGAAGGGATGACAGGATAGGCAATG
CACTGTTATGCACCAATGTCTGGCACAATTTATTCAATATGGGGAGGTATTAGAATAGTGTCCCACACCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
162 bp53 aa16177-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MGKVEIHETTEVSIKGIYGFIERKVTKFGSGAKVDCPKEFLGKRVYIVITRDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1038 bp346 aa2131250+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MGLVRSEDIQYKLEEINNILGKKYVQEHPEKGRNWRTYESEFSRRIKTAMKELDPLIEKAVSIMHIAKRPGHPHSLLLAQRVKLILIKQLVGESNRMFVN
MLDIFSMLSGIDVSYKTIERLYSDNEVVMAIFNLHVLLLKNKNIANSDATGDGTGYSLTVKKNYESYAQRLKDLAKENKEIGKEEHKDKKSKGHRKRLFA
YSFSIMDLRTRMYIASGTSMKSERNAYDNAMRIVNKIGINIDSIRLDRYYSSPSYVDKLGDTKVYIIPKKNSTLHGSHKWKSIIREFLNDTMNYLEKYHK
RSNSESGFAADKKMLGWNMAQRRDDRIGNALLCTNVWHNLFNMGRY

 

Blast result :
Comments
ISFac3 is 67% (ORF1) aa similar to ISMhu3 and 58%(ORF2) aa similar to ISA1214-6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission to Genbank