ISArch7

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR937010 ND Uncultured archeon
Uncultured archeon
DNA section
IS Length : 1839 bp

Ends


IR Length : 18/22

IRL : GTAACTACTCACGTTTTAGAAGTCAGTAGGAACCAACCCCCTTTGTAGAT
IRR : GTAACCACTCACCTTTAGGAAGCCCCCACCTCACAACCCGCCACTCCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAAAACGAAGTTTTTGGATGCAAATTA8

DNA sequence

GTAACTACTCACGTTTTAGAAGTCAGTAGGAACCAACCCCCTTTGTAGATTGCACCTCCGAATCCGAACCGCCATTTCCCTTCAGATTTACAGCCTCCGA
ATGACCACAAGCTTTATATACTTGAACTATCTAATAGATAGCTAATGAAAAAAGTCCCCATAATACCGGAAACCGAGATCCGGATCAACAACATCCGTGG
ATTCTATATCCGAAAGGTCACACGTTTAGGAACGAGCGCAAAAGTCGATTGTCCAAAAGAACATTTAGGAAAAACCGTATATCTGGTGATCTTGAACCAT
GATGATGAATGAAGACCTGCCAGAGGATCTGAGGGAATATCTCCACAATTTAGAGCGAAAAATCGCTCAATTAGAGAAAGATCTCAAAAAGGAGAGCGCT
GGTAAGGAGGCATTCCGGCAAAGCAACAAAAAACTCAAAAAAGAAAACGAAAAGCTCAAAAAGGAACTTGCGCGGATGCAAGGTTCCGCACCGGTTCTTG
CAGGGTCTGATAAGACCGCCGAAGCAGGCGGCGTTCCCACTTCAAAGACTTTCTACAGACGAAACAGACAGGAAGGAAAGAAAAAGCCCACTGGTGGTCA
ACCCGGGCACCCCGGCCACGCGAGGAAAAAACCAACTCCAAACTCTCCCCCGATACCCATCACACTGGATAAATGCCCAGAATGCGGTACACCACTGGGC
GAACCCCGGAAAGGCGCCGAACAGAAGCGAACGGTGACAGATATTCCGCTTCCTGACCATATCATCTATGAAATCGTTTATCCAAGGTACTGGTGCGGGG
AGTGTAAAAAATTGGTCCGTGGCGAAGCCCCGTGGCTGCCGCCAAAGCAACATTTCGGACCTGCCGTAGCCTGCTGGATTGCGTACCAGAGAATGCTTGG
TTTGACCATTGGTAAGATACAATCGAGTTTATTAGAGACTTATGGTATTACTATGGGGGAATCAACGATTCTTAAGCTGGAAAAGTGGGTGGCAGATACA
CTCCATGAAGATTACGAGAAGATCCGCGAGGAGATCGTAAAATCCAGCGCAGTGAATGCCGACGAGACCAGTTTCAGGATCGGCGGAACGAATGGTTGGT
TGTGGGTCTTTACTTCAACGGTGGGTTCATATTACATGGTTGCTCCAACCAGAGGTCACAAAGTTCCGGAAGAAACGCTCGAAGGGTTCGAAGGCGTTCT
GGGCAGAGATGCCTGGAAGCCGTACGATGTAGTAAAATGCGAAGGGCATCAGCTCGATCTTCTTCATGTAAATCGGTGGCTGGAGAGGGCAGAGATCAAA
CACAGGATAGAACCGCGCACACTCTTATCATCTAGGTCTGCGAAATTAACGAAACCGGGAAGACCTCCCGGGCAGTTTATAGATTTTGCTGACGGGATTC
GGTCGATTCTGAAAAGGGCAGTCGAGTATACGGAGAACGACCCTCCGCCATCCATGGAAGAACGCAAAAACGCTTGCAGAGAGTTTCAGAAAGAGATGAA
AGCATTTCTTGATAGGAAATGGACCGATGATGACGCCATACGGATCTCCAAGGAACTCCGAAAGCGACTGGATATGTTATTCACGTTCATGGACCACGAG
GGCGTACCCTGGCACAACAACGACGCAGAACGAGCTATCCGCCAGGGCGTACTCCACCGCAAGATTAGTGGTGGCAGGAGGACGTGGACCGGCGCTGAAG
TATTTGAAGTGATCTTAAGCACCTACGAAACAGCAAAGAAGAGAGGAGAGAGATTTATCGAAATGGTCAGGGCAAAGTTAGATCCACCCGCCGGAGTGGC
GGGTTGTGAGGTGGGGGCTTCCTAAAGGTGAGTGGTTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
168 bp55 aa145312+No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

MKKVPIIPETEIRINNIRGFYIRKVTRLGTSAKVDCPKEHLGKTVYLVILNHDDE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1527 bp508 aa2991825+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMMNEDLPEDLREYLHNLERKIAQLEKDLKKESAGKEAFRQSNKKLKKENEKLKKELARMQGSAPVLAGSDKTAEAGGVPTSKTFYRRNRQEGKKKPTGG
QPGHPGHARKKPTPNSPPIPITLDKCPECGTPLGEPRKGAEQKRTVTDIPLPDHIIYEIVYPRYWCGECKKLVRGEAPWLPPKQHFGPAVACWIAYQRML
GLTIGKIQSSLLETYGITMGESTILKLEKWVADTLHEDYEKIREEIVKSSAVNADETSFRIGGTNGWLWVFTSTVGSYYMVAPTRGHKVPEETLEGFEGV
LGRDAWKPYDVVKCEGHQLDLLHVNRWLERAEIKHRIEPRTLLSSRSAKLTKPGRPPGQFIDFADGIRSILKRAVEYTENDPPPSMEERKNACREFQKEM
KAFLDRKWTDDDAIRISKELRKRLDMLFTFMDHEGVPWHNNDAERAIRQGVLHRKISGGRRTWTGAEVFEVILSTYETAKKRGERFIEMVRAKLDPPAGV
AGCEVGAS

 

Blast result :
Comments
ISArch7 is 62% (ORF1) aa similar to ISA1214-1(ORF1) and 79% (ORF2) aa similar to ISMhu3.
References
1] Meyerdierks,A., Kube,M., Lombardot,T., Knittel,K., Bauer,M., Glockner,F.O., Reinhardt,R. and Amann,R. (2005) Environ. Microbiol. 7 (12), 1937-1951