ISMba5

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 872 bp

Ends


IR Length : 15/17

IRL : GAGCCTATCCGAAAAGTAGAATACCTATATTTTATGGTAATATTTATTAG
IRR : GAACCTATCCGAAAAATCCTGCTGCTCTGAATGTTATCCATGCACATGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CTATAAAAGCGTCTCACTTAGTAAAAGTAAAAATC3

DNA sequence

GAGCCTATCCGAAAAGTAGAATACCTATATTTTATGGTAATATTTATTAGTGTCAACACGAAAAAACGGACATGACTACGAGATCTCTAACGACTTCTGG
AATAAAATCAAACCATTATTACCTCTCCCTAAATCTAAAAAGAAGCCTGGAAGACCTAGAAAAGATGATAAGAGAATCTTAAGTGGTATACTGTATCTTC
TTCGTACTGGTTGCCAATGGAAATCTTTGCCACGATTTTATGGAGCTCCAAGCACTGTTCATGATCGATTTCAAGAATGGCAAAGATCTGGCTTCTTTGA
AAAAATGTGGCAATCTGGTCTAATGGAGTACGAGAATAAGAATGGATTAGAGTGGGAGTGGCAAGCAATTGACGGTGCTATGACAAAAGCACCATTAGGT
GGATCAGGAACCGGAGCTAATCCAACTGATCGCGGCAAGAAAGGTACAAAAAGGAGTATTTTAACAGATGGTAAAGGTATACCACTTTCAGTAACTGTTG
ATGGAGCAAATCGTCACGATAAAAAGCTTGTAAAAAGGACGTTGGATGCCATTATTTTTGAAAGACCTTTCCCAGATGAGGGAATTCAGAACATGTGTAT
GGATAAAGGATATGATTTTCCTGATATCAGAGAATTGGTCAAAGAATATGGTTATACCGCCCATATCAAAAGTCGTGGAGAAGAAAACATAAGAATAGAG
ATACCAGGTTTTAGGGCAAGAAGGTGGGTTGTAGAAAGGACACATTCATGGCTAAACAGATTCAGAAGACTGCTTATTAGATGGGAAAAGAAAATCGAGA
ATTACCTTGCTATGCTTCATTTCGCATGTGCATGGATAACATTCAGAGCAGCAGGATTTTTCGGATAGGTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
819 bp272 aa50868+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTRKNGHDYEISNDFWNKIKPLLPLPKSKKKPGRPRKDDKRILSGILYLLRTGCQWKSLPRFYGAPSTVHDRFQEWQRSGFFEKMWQSGLMEYENKNGL
EWEWQAIDGAMTKAPLGGSGTGANPTDRGKKGTKRSILTDGKGIPLSVTVDGANRHDKKLVKRTLDAIIFERPFPDEGIQNMCMDKGYDFPDIRELVKEY
GYTAHIKSRGEENIRIEIPGFRARRWVVERTHSWLNRFRRLLIRWEKKIENYLAMLHFACAWITFRAAGFFG

 

Blast result :
Comments
ISMba5 is 90% aa similar to ISMac11.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank