ISArch6
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714845 | ND | Uncultured archaeon | Uncultured archaeon GZfos27B6 |
DNA section
IS Length : 1260 bp
Ends
IR Length : 15/19
IRL : GAGAATTTTGAAAAACCTCCACTCCTTGAAGAAGACAGTTAAAAAACCAT
IRR : GAGGATTTTGATTAACCCCTCTTTTAAGAATCTTAGAAATCCCATATGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAATATCATAAAC | TTTA | GAATATTAATCACTTAAA | 4 |
DNA sequence
GAGAATTTTGAAAAACCTCCACTCCTTGAAGAAGACAGTTAAAAAACCATATAACCAACGGGAGCTGATGGAACCAATCATGAGAAAAAAGATGCACAAA
TTGAGTCCCAAAACGCTAAAAGCGTAAAGTTTATATGTTGTTATCGCTATAAACATATACATGAAGTCCATTATCGATTTTGCACTTAATGAGGAGTATG
AGCGAGTTAAACAGCTCGGGGACAGGCTAATGGAGATTGAGTCAGTGATAGACTGGGGAGCTTTTCGTCGAATAGTGGGAGAGATGTATGAGAACAAGAG
CGAGCGAGGCGGCAGACCAAACCTCGATGAGGTGTTAATGGTCAAGCTGTTAGTGCTTCAGCAATGGCATGGTCTATCTGACCCAGAGCTCGAAAAGCAG
GTTACTGACAGGATTTCGTTCAGGAAGTTTCTTGGATTTCCCGCGGTTATCCCAGATTTTACCACGGTCTGGTATTTCAGGGAGCGATTAGCGAAAACAG
GTAAAGACCGAGCAATATGGGAGGAACTCCAGCGACAACTCGATTCTATGGGTCTAAAAGTAAAGCAAGGAGTAGTCCAGGATGCGACTTTTATTACTTC
TGATCCCGGACATGCCAAGGCGGATACGCCACGAGGGAGCGAAGCGAAAACGAGGAGAAGCAAGGATGGCACATGGGCAAAGAAAGGCAGTAAATCCTTC
TTTGGCTACAAGCTCCACAGTAAGCCGGACATGGACTACGGGCTCATACGGGATCTAGAGACGACCACTGCGGCGATTCACGATAGCCAGGTTGACTTAT
CCATGGAAGGTGAGGTCGTGTACCGAGACAAAGGATATCACGGAAGTACCCCCAAAGGCTACTCCGCGACGATGAAACGACGTGCTCGGGATCACCCCTT
GAGCATCATGGATAAGTTGCGGAATATCCGAATCAGCAAAAAGCGAGCTCCAGGCGAGAGGCAATATGCGGTTATCAGAAGGGTTTTCAATGCATCACAC
GTAATGGTAACCACGGTACAAAGGGTGAGCGTCAAAATGATATTTACTGCCTTTGGATTTAACCTGTACCATTTATGTACGCTCAGAAAGCAGGGTGCCG
TATAGGATAGCGGTAGCTATCGACAAAAACCGAAAAAGGCAGGGATTTGAGCAGTTAGGAGGAGAAAAAAGACCGAAAAGAGATGAAAAAACAGAAAAAA
TGAGCAAGAAAGCATATGGGATTTCTAAGATTCTTAAAAGAGGGGTTAATCAAAATCCTC
TTGAGTCCCAAAACGCTAAAAGCGTAAAGTTTATATGTTGTTATCGCTATAAACATATACATGAAGTCCATTATCGATTTTGCACTTAATGAGGAGTATG
AGCGAGTTAAACAGCTCGGGGACAGGCTAATGGAGATTGAGTCAGTGATAGACTGGGGAGCTTTTCGTCGAATAGTGGGAGAGATGTATGAGAACAAGAG
CGAGCGAGGCGGCAGACCAAACCTCGATGAGGTGTTAATGGTCAAGCTGTTAGTGCTTCAGCAATGGCATGGTCTATCTGACCCAGAGCTCGAAAAGCAG
GTTACTGACAGGATTTCGTTCAGGAAGTTTCTTGGATTTCCCGCGGTTATCCCAGATTTTACCACGGTCTGGTATTTCAGGGAGCGATTAGCGAAAACAG
GTAAAGACCGAGCAATATGGGAGGAACTCCAGCGACAACTCGATTCTATGGGTCTAAAAGTAAAGCAAGGAGTAGTCCAGGATGCGACTTTTATTACTTC
TGATCCCGGACATGCCAAGGCGGATACGCCACGAGGGAGCGAAGCGAAAACGAGGAGAAGCAAGGATGGCACATGGGCAAAGAAAGGCAGTAAATCCTTC
TTTGGCTACAAGCTCCACAGTAAGCCGGACATGGACTACGGGCTCATACGGGATCTAGAGACGACCACTGCGGCGATTCACGATAGCCAGGTTGACTTAT
CCATGGAAGGTGAGGTCGTGTACCGAGACAAAGGATATCACGGAAGTACCCCCAAAGGCTACTCCGCGACGATGAAACGACGTGCTCGGGATCACCCCTT
GAGCATCATGGATAAGTTGCGGAATATCCGAATCAGCAAAAAGCGAGCTCCAGGCGAGAGGCAATATGCGGTTATCAGAAGGGTTTTCAATGCATCACAC
GTAATGGTAACCACGGTACAAAGGGTGAGCGTCAAAATGATATTTACTGCCTTTGGATTTAACCTGTACCATTTATGTACGCTCAGAAAGCAGGGTGCCG
TATAGGATAGCGGTAGCTATCGACAAAAACCGAAAAAGGCAGGGATTTGAGCAGTTAGGAGGAGAAAAAAGACCGAAAAGAGATGAAAAAACAGAAAAAA
TGAGCAAGAAAGCATATGGGATTTCTAAGATTCTTAAAAGAGGGGTTAATCAAAATCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 161 | 1105 | + | No |
Chemistry : DDE
ORF sequence :
MKSIIDFALNEEYERVKQLGDRLMEIESVIDWGAFRRIVGEMYENKSERGGRPNLDEVLMVKLLVLQQWHGLSDPELEKQVTDRISFRKFLGFPAVIPDF
TTVWYFRERLAKTGKDRAIWEELQRQLDSMGLKVKQGVVQDATFITSDPGHAKADTPRGSEAKTRRSKDGTWAKKGSKSFFGYKLHSKPDMDYGLIRDLE
TTTAAIHDSQVDLSMEGEVVYRDKGYHGSTPKGYSATMKRRARDHPLSIMDKLRNIRISKKRAPGERQYAVIRRVFNASHVMVTTVQRVSVKMIFTAFGF
NLYHLCTLRKQGAV
TTVWYFRERLAKTGKDRAIWEELQRQLDSMGLKVKQGVVQDATFITSDPGHAKADTPRGSEAKTRRSKDGTWAKKGSKSFFGYKLHSKPDMDYGLIRDLE
TTTAAIHDSQVDLSMEGEVVYRDKGYHGSTPKGYSATMKRRARDHPLSIMDKLRNIRISKKRAPGERQYAVIRRVFNASHVMVTTVQRVSVKMIFTAFGF
NLYHLCTLRKQGAV
Blast result :
Comments
ISArch6 is 48% aa similar to IS1186.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F.(2004) Science 305 (5689), 1457-1462