ISArch6

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714845 ND Uncultured archaeon
Uncultured archaeon GZfos27B6
DNA section
IS Length : 1260 bp

Ends


IR Length : 15/19

IRL : GAGAATTTTGAAAAACCTCCACTCCTTGAAGAAGACAGTTAAAAAACCAT
IRR : GAGGATTTTGATTAACCCCTCTTTTAAGAATCTTAGAAATCCCATATGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGAATATCATAAACTTTAGAATATTAATCACTTAAA4

DNA sequence

GAGAATTTTGAAAAACCTCCACTCCTTGAAGAAGACAGTTAAAAAACCATATAACCAACGGGAGCTGATGGAACCAATCATGAGAAAAAAGATGCACAAA
TTGAGTCCCAAAACGCTAAAAGCGTAAAGTTTATATGTTGTTATCGCTATAAACATATACATGAAGTCCATTATCGATTTTGCACTTAATGAGGAGTATG
AGCGAGTTAAACAGCTCGGGGACAGGCTAATGGAGATTGAGTCAGTGATAGACTGGGGAGCTTTTCGTCGAATAGTGGGAGAGATGTATGAGAACAAGAG
CGAGCGAGGCGGCAGACCAAACCTCGATGAGGTGTTAATGGTCAAGCTGTTAGTGCTTCAGCAATGGCATGGTCTATCTGACCCAGAGCTCGAAAAGCAG
GTTACTGACAGGATTTCGTTCAGGAAGTTTCTTGGATTTCCCGCGGTTATCCCAGATTTTACCACGGTCTGGTATTTCAGGGAGCGATTAGCGAAAACAG
GTAAAGACCGAGCAATATGGGAGGAACTCCAGCGACAACTCGATTCTATGGGTCTAAAAGTAAAGCAAGGAGTAGTCCAGGATGCGACTTTTATTACTTC
TGATCCCGGACATGCCAAGGCGGATACGCCACGAGGGAGCGAAGCGAAAACGAGGAGAAGCAAGGATGGCACATGGGCAAAGAAAGGCAGTAAATCCTTC
TTTGGCTACAAGCTCCACAGTAAGCCGGACATGGACTACGGGCTCATACGGGATCTAGAGACGACCACTGCGGCGATTCACGATAGCCAGGTTGACTTAT
CCATGGAAGGTGAGGTCGTGTACCGAGACAAAGGATATCACGGAAGTACCCCCAAAGGCTACTCCGCGACGATGAAACGACGTGCTCGGGATCACCCCTT
GAGCATCATGGATAAGTTGCGGAATATCCGAATCAGCAAAAAGCGAGCTCCAGGCGAGAGGCAATATGCGGTTATCAGAAGGGTTTTCAATGCATCACAC
GTAATGGTAACCACGGTACAAAGGGTGAGCGTCAAAATGATATTTACTGCCTTTGGATTTAACCTGTACCATTTATGTACGCTCAGAAAGCAGGGTGCCG
TATAGGATAGCGGTAGCTATCGACAAAAACCGAAAAAGGCAGGGATTTGAGCAGTTAGGAGGAGAAAAAAGACCGAAAAGAGATGAAAAAACAGAAAAAA
TGAGCAAGAAAGCATATGGGATTTCTAAGATTCTTAAAAGAGGGGTTAATCAAAATCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa1611105+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSIIDFALNEEYERVKQLGDRLMEIESVIDWGAFRRIVGEMYENKSERGGRPNLDEVLMVKLLVLQQWHGLSDPELEKQVTDRISFRKFLGFPAVIPDF
TTVWYFRERLAKTGKDRAIWEELQRQLDSMGLKVKQGVVQDATFITSDPGHAKADTPRGSEAKTRRSKDGTWAKKGSKSFFGYKLHSKPDMDYGLIRDLE
TTTAAIHDSQVDLSMEGEVVYRDKGYHGSTPKGYSATMKRRARDHPLSIMDKLRNIRISKKRAPGERQYAVIRRVFNASHVMVTTVQRVSVKMIFTAFGF
NLYHLCTLRKQGAV

 

Blast result :
Comments
ISArch6 is 48% aa similar to IS1186.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F.(2004) Science 305 (5689), 1457-1462