ISMma11

  • Family ISNCY
  • Group ISM1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003901 ND Methanosarcina mazei
Methanosarcina mazei
DNA section
IS Length : 1619 bp

Ends


IR Length : 16/24

IRL : GACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACA
IRR : GACACAATTTCATAATTTAGTGATTTCTCATTTTTTCCTTCCTTAAATCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATATTTACAGGATTTTTTACGTGTTTAAT9

DNA sequence

GACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACAAAATTATAATTCTATAATTATGTAATGATGTTACGGCAAAAACAATGGTA
ACTATAAACCTTACTCTTAATAACTTTTCGGAGCTCCCTTCTCTCTTAGACGTTTTTGGTTGTTTTGGAAACGATTACGAATACACTACACAAGGAATTT
TTCGTAGAAAAATTCCTCCAGCCTGTTCAATTTGTAGTACTCCAATGGTTCATAATGGCTATAATCCCCATACCAAACAAGGTCTTGGCGAAATCAACAT
TGGTAGATATAAATGCTCAAATTGTGGTCGTACATACGAAGAAGATTATAGTTTTTGGGGAGATCTGAAAGCTTTACTTTTTGATTCATTCAATGATTTC
TTCAAGTTACTCAGATACCATAAAGTTTCATACGATGGAATTTCTGATATAATGGAATTTATCTATCCAAGATCAAGAAGCACTATTTTAAGAGCATTCT
ACAAAGAAATGGAACAGGAAACTGTTCCATTTTCAGAAAATATACATATGGTACACTATGACGAACAACATCCAAAAGAAGGACGCTGTCAGAAATACCG
TTTAACCTTACTGGACGCAAAAACTCAAACAACAATAGCAGATGACCTTTTTGATGATAAGAGTCCAGAAACAATCAAGGAATTTCTACGGAAAAATCTT
GATGCATCAGAACCTGTGTTTATCGTTACGGATTTTGATAAGAGATATCCTGATATATTAAAGGAAATTTTTGGAGATAAGTTAGTTCATCAATATTGTT
TGATGCACTTAAACAAGCTTATAGTTAGTGATTTCCCAAAGAATACAACGATTGAACAGGAACTATTGAAGTACAGGTTATTGAATATATTTTACAATCG
AGAGAATGAAATTAAGTTTCTGGAAGAACTTCTATCTGAAGAACTCAACGTAATTAATAATGAAGAAAAACATCAAGAATGGAGTAAAAAAGCAAAAAAG
GAATTTAACCAATTTAGACGTAAATTAAAGCTTGAAAGAAGACGAAAAAAGGAAAATCTTCCACTTAATAGTCTTGAAAAAGCAAGAGATAACTTCGATA
AATTAATGGAAAATATAAGAACATACGATCAAACGATTCAAAAACGATTATGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATTATCTTCC
AGGAGCGCCAGCGACAAATAACCCTATAGAAAGCTATTATTCTAAAAGTCTAAAAACTGATAACAAGAAGCAGTTCAGGACTGATAAAGGAATTGGGAAC
CAGATTAAACTTACTCAAATGAGAAGATTAAATTTGCTCAAGAAACCACAAAAGTCATTTCTGGAATTGTTCAGATTATTTAATCCATTTAAGCTTTAGT
AATCTAGTTTGAGAGAGGAGTTAAGGATTATGTAGCGGAGCGTATCGATTTAAGGCAAAAAATAAAGTGAAAAGTTAAAGGAATAAAAGAATTCTTTGGC
ATGAATGCCAAAGAAATTGTTTCTCAAGGAATATTACAGTTTATTTGGGCAGTTAGTAGAGAAAAGTGAAGATTTAAGGAAGGAAAAAATGAGAAATCAC
TAAATTATGAAATTGTGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa951399+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MVTINLTLNNFSELPSLLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEINIGRYKCSNCGRTYEEDYSFWGDLKALLFDSFN
DFFKLLRYHKVSYDGISDIMEFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRK
NLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLNKLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELLSEELNVINNEEKHQEWSKKA
KKEFNQFRRKLKLERRRKKENLPLNSLEKARDNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI
GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL

 

Blast result :
Comments
ISMma11 is 39% ISMst1 aa similar. There are 6 complete copies in Methanosarcina mazei genome. There are also 3 complete and one partial copy of MITES (l=199 bp, IR 20/24 and DR=8).
References
1] Deppenmeier,U., Johann,A., Hartsch,T., Merkl,R., Schmitz,R.A., Martinez-Arias,R., Henne,A., Wiezer,A., Baumer,S., Jacobi,C., Bruggemann,H., Lienard,T., Christmann,A., Bomeke,M., Steckel,S., Bhattacharyya,A., Lykidis,A., Overbeek,R., Klenk,H.P., Gunsalus,R.P., Fritz,H.J. and Gottschalk,G. (2002) J. Mol. Microbiol. Biotechnol. 4 (4), 453-461