ISH10B

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002607 ND Halobacterium sp.
Halobacterium salinarum R1
Halobacterium sp. NRC-1
DNA section
IS Length : 1629 bp

Ends


IR Length : 14/15

IRL : GTACGTGTTTAGCCCCGTCTGATTTCGTCACTGTCTCGTAGGTGGTGGCC
IRR : GTACGTGTTTACCCCGAGGTCTCAACAACCGGCACAGTCTGCTCTCGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTAGACGTTCCGCCGGGGTCTTCGAGCG8

DNA sequence

GTACGTGTTTAGCCCCGTCTGATTTCGTCACTGTCTCGTAGGTGGTGGCCTGTGACAGATACATGGTCTGTCAGCAGGGAGTCAGTCTACATTCTCAGGG
ATGGTCTCCGCTGCCCGGAGACCATCCCGTCGGCCCTGCTGTCGTCGTTTCGAGGTGGAATCGATGAGCTGGGACGATCTCTCCAAGGACGAACTCCTCT
CGCGGTTTCTCCAGATGGAGGAGCGAATCGACGAGCTGGAAGAGAAGATTGCCCAGAAGGACAAGCGGATCGAGGAACAGAACGAACGGATCGAAGAGCA
GCAAGAGCGGATCGAAGAACTCGAAACACGTCTCCGGAAGTACGAGAATCCACACACTCCACCCAGTAAGCGACGGTCGGGGACCGACGAGTCCCCGACC
TCGCAGGACGACGAAGACGACGATGTCCGAACTGATGGTGGTACTCCCGGTCGAAAGGACGGTCACAACCCGGAGTGGCGCTCTCCGCCCGATCCTGATG
AAGAAATCGAGGTCACCTCTGACTGTTGTCCCGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAAGTCCCGGATCC
ACAGCCACCAGAAGTCACCCAGTACAACCGACACCGCTACCAATGCGACTCCTGTGGAACTGAGACGGTTGCGACTCACCCCGACTGCCCCGATGAGGGG
CAGTTCGGGGTGAACGTCATCGCGCAATCTGCCCTGTCACGGTACGATCACCGCCTTCCCTACCGGAAAATCACGGACCGCTTCGAGCAACTTCACGGAC
TCGAACTCTCAGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATTCAGGAGGCTGA
AATCGTCCACGTTGACGAAACCGGCATCAAGCGTGACGGTGACCAAGCGTGGATCTGGACGTTTCGGACGGACGAGCATACGCTGTACGCGGTCAGAGAG
AGTCGTGGGAGTGATGTTCCCGCGGAAGTCCTTGGCGAGGACTTCGCGGGAACGGTCATCTGTGATGGGTGGACGGCGTATCCAGCGTTCAGCAGTACGC
TTCAGCGGTGCTGGGCACATCTTCTCCGGGAGGCTGAAGACGTTGCTAGTGACCACGAGGAGGCAGAACCGGTGTACCGGTATCTCAAGCAGATGTTCGT
CGGTCTCCAGTCGTGGCTGGAGACCGACCCAGATCCTCGTGCGAGAGCACAGATGCATCGAGCGTGTCAGGACGGCCTCAGATCGCTCGTTGAGCGGTCA
GTGACCGACGAACCAGTGGCAACACTCCTCGGGAAGATCGAAGGTGGACTCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCCGACGAACA
ATGCCGCAGAAAACGCCCTTCGTGAACCTGTTGTTCTCCGGAAAATCATCGGAACACTCCGGAACGACCGTGGCATGTTCGTTCACGAGACGATCTTGTC
CCTGCTGGCGACGTGGCGCCAGCAGGGACGCAACCCATACGAGGAACTTACGCGGGTTGTCCACGACAACGAAATGATCTCACGAGAGCAGACTGTGCCG
GTTGTTGAGACCTCGGGGTAAACACGTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1458 bp486 aa1641621+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSWDDLSKDELLSRFLQMEERIDELEEKIAQKDKRIEEQNERIEEQQERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDG
HNPEWRSPPDPDEEIEVTSDCCPECGDHFDESVGVSPRLVEEVPDPQPPEVTQYNRHRYQCDSCGTETVATHPDCPDEGQFGVNVIAQSALSRYDHRLPY
RKITDRFEQLHGLELSGASAWHATERAARAGRCEYEQIRREIQEAEIVHVDETGIKRDGDQAWIWTFRTDEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFSSTLQRCWAHLLREAEDVASDHEEAEPVYRYLKQMFVGLQSWLETDPDPRARAQMHRACQDGLRSLVERSVTDEPVATLLGKIEGGLDHWL
TFVGEPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELTRVVHDNEMISREQTVPVVETSG

 

Blast result :
Comments
ISH10B is 88% aa similar to ISH10 and 59% aa similar to ISArch15.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S.(2000) Proc. Natl. Acad. Sci. USA 24 (97), 12176-12181.