ISH10B
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002607 | ND | Halobacterium sp. | Halobacterium salinarum R1 Halobacterium sp. NRC-1 |
DNA section
IS Length : 1629 bp
Ends
IR Length : 14/15
IRL : GTACGTGTTTAGCCCCGTCTGATTTCGTCACTGTCTCGTAGGTGGTGGCC
IRR : GTACGTGTTTACCCCGAGGTCTCAACAACCGGCACAGTCTGCTCTCGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAGACGTTC | CGCCGGGG | TCTTCGAGCG | 8 |
DNA sequence
GTACGTGTTTAGCCCCGTCTGATTTCGTCACTGTCTCGTAGGTGGTGGCCTGTGACAGATACATGGTCTGTCAGCAGGGAGTCAGTCTACATTCTCAGGG
ATGGTCTCCGCTGCCCGGAGACCATCCCGTCGGCCCTGCTGTCGTCGTTTCGAGGTGGAATCGATGAGCTGGGACGATCTCTCCAAGGACGAACTCCTCT
CGCGGTTTCTCCAGATGGAGGAGCGAATCGACGAGCTGGAAGAGAAGATTGCCCAGAAGGACAAGCGGATCGAGGAACAGAACGAACGGATCGAAGAGCA
GCAAGAGCGGATCGAAGAACTCGAAACACGTCTCCGGAAGTACGAGAATCCACACACTCCACCCAGTAAGCGACGGTCGGGGACCGACGAGTCCCCGACC
TCGCAGGACGACGAAGACGACGATGTCCGAACTGATGGTGGTACTCCCGGTCGAAAGGACGGTCACAACCCGGAGTGGCGCTCTCCGCCCGATCCTGATG
AAGAAATCGAGGTCACCTCTGACTGTTGTCCCGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAAGTCCCGGATCC
ACAGCCACCAGAAGTCACCCAGTACAACCGACACCGCTACCAATGCGACTCCTGTGGAACTGAGACGGTTGCGACTCACCCCGACTGCCCCGATGAGGGG
CAGTTCGGGGTGAACGTCATCGCGCAATCTGCCCTGTCACGGTACGATCACCGCCTTCCCTACCGGAAAATCACGGACCGCTTCGAGCAACTTCACGGAC
TCGAACTCTCAGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATTCAGGAGGCTGA
AATCGTCCACGTTGACGAAACCGGCATCAAGCGTGACGGTGACCAAGCGTGGATCTGGACGTTTCGGACGGACGAGCATACGCTGTACGCGGTCAGAGAG
AGTCGTGGGAGTGATGTTCCCGCGGAAGTCCTTGGCGAGGACTTCGCGGGAACGGTCATCTGTGATGGGTGGACGGCGTATCCAGCGTTCAGCAGTACGC
TTCAGCGGTGCTGGGCACATCTTCTCCGGGAGGCTGAAGACGTTGCTAGTGACCACGAGGAGGCAGAACCGGTGTACCGGTATCTCAAGCAGATGTTCGT
CGGTCTCCAGTCGTGGCTGGAGACCGACCCAGATCCTCGTGCGAGAGCACAGATGCATCGAGCGTGTCAGGACGGCCTCAGATCGCTCGTTGAGCGGTCA
GTGACCGACGAACCAGTGGCAACACTCCTCGGGAAGATCGAAGGTGGACTCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCCGACGAACA
ATGCCGCAGAAAACGCCCTTCGTGAACCTGTTGTTCTCCGGAAAATCATCGGAACACTCCGGAACGACCGTGGCATGTTCGTTCACGAGACGATCTTGTC
CCTGCTGGCGACGTGGCGCCAGCAGGGACGCAACCCATACGAGGAACTTACGCGGGTTGTCCACGACAACGAAATGATCTCACGAGAGCAGACTGTGCCG
GTTGTTGAGACCTCGGGGTAAACACGTAC
ATGGTCTCCGCTGCCCGGAGACCATCCCGTCGGCCCTGCTGTCGTCGTTTCGAGGTGGAATCGATGAGCTGGGACGATCTCTCCAAGGACGAACTCCTCT
CGCGGTTTCTCCAGATGGAGGAGCGAATCGACGAGCTGGAAGAGAAGATTGCCCAGAAGGACAAGCGGATCGAGGAACAGAACGAACGGATCGAAGAGCA
GCAAGAGCGGATCGAAGAACTCGAAACACGTCTCCGGAAGTACGAGAATCCACACACTCCACCCAGTAAGCGACGGTCGGGGACCGACGAGTCCCCGACC
TCGCAGGACGACGAAGACGACGATGTCCGAACTGATGGTGGTACTCCCGGTCGAAAGGACGGTCACAACCCGGAGTGGCGCTCTCCGCCCGATCCTGATG
AAGAAATCGAGGTCACCTCTGACTGTTGTCCCGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAAGTCCCGGATCC
ACAGCCACCAGAAGTCACCCAGTACAACCGACACCGCTACCAATGCGACTCCTGTGGAACTGAGACGGTTGCGACTCACCCCGACTGCCCCGATGAGGGG
CAGTTCGGGGTGAACGTCATCGCGCAATCTGCCCTGTCACGGTACGATCACCGCCTTCCCTACCGGAAAATCACGGACCGCTTCGAGCAACTTCACGGAC
TCGAACTCTCAGGTGCATCCGCGTGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGAGCAGATCCGTCGAGAGATTCAGGAGGCTGA
AATCGTCCACGTTGACGAAACCGGCATCAAGCGTGACGGTGACCAAGCGTGGATCTGGACGTTTCGGACGGACGAGCATACGCTGTACGCGGTCAGAGAG
AGTCGTGGGAGTGATGTTCCCGCGGAAGTCCTTGGCGAGGACTTCGCGGGAACGGTCATCTGTGATGGGTGGACGGCGTATCCAGCGTTCAGCAGTACGC
TTCAGCGGTGCTGGGCACATCTTCTCCGGGAGGCTGAAGACGTTGCTAGTGACCACGAGGAGGCAGAACCGGTGTACCGGTATCTCAAGCAGATGTTCGT
CGGTCTCCAGTCGTGGCTGGAGACCGACCCAGATCCTCGTGCGAGAGCACAGATGCATCGAGCGTGTCAGGACGGCCTCAGATCGCTCGTTGAGCGGTCA
GTGACCGACGAACCAGTGGCAACACTCCTCGGGAAGATCGAAGGTGGACTCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCCGACGAACA
ATGCCGCAGAAAACGCCCTTCGTGAACCTGTTGTTCTCCGGAAAATCATCGGAACACTCCGGAACGACCGTGGCATGTTCGTTCACGAGACGATCTTGTC
CCTGCTGGCGACGTGGCGCCAGCAGGGACGCAACCCATACGAGGAACTTACGCGGGTTGTCCACGACAACGAAATGATCTCACGAGAGCAGACTGTGCCG
GTTGTTGAGACCTCGGGGTAAACACGTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1458 bp | 486 aa | 164 | 1621 | + | No |
Chemistry : DDE
ORF sequence :
MSWDDLSKDELLSRFLQMEERIDELEEKIAQKDKRIEEQNERIEEQQERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDG
HNPEWRSPPDPDEEIEVTSDCCPECGDHFDESVGVSPRLVEEVPDPQPPEVTQYNRHRYQCDSCGTETVATHPDCPDEGQFGVNVIAQSALSRYDHRLPY
RKITDRFEQLHGLELSGASAWHATERAARAGRCEYEQIRREIQEAEIVHVDETGIKRDGDQAWIWTFRTDEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFSSTLQRCWAHLLREAEDVASDHEEAEPVYRYLKQMFVGLQSWLETDPDPRARAQMHRACQDGLRSLVERSVTDEPVATLLGKIEGGLDHWL
TFVGEPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELTRVVHDNEMISREQTVPVVETSG
HNPEWRSPPDPDEEIEVTSDCCPECGDHFDESVGVSPRLVEEVPDPQPPEVTQYNRHRYQCDSCGTETVATHPDCPDEGQFGVNVIAQSALSRYDHRLPY
RKITDRFEQLHGLELSGASAWHATERAARAGRCEYEQIRREIQEAEIVHVDETGIKRDGDQAWIWTFRTDEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFSSTLQRCWAHLLREAEDVASDHEEAEPVYRYLKQMFVGLQSWLETDPDPRARAQMHRACQDGLRSLVERSVTDEPVATLLGKIEGGLDHWL
TFVGEPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELTRVVHDNEMISREQTVPVVETSG
Blast result :
Comments
ISH10B is 88% aa similar to ISH10 and 59% aa similar to ISArch15.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S.(2000) Proc. Natl. Acad. Sci. USA 24 (97), 12176-12181.