ISMbu2

  • Family ISNCY
  • Group ISM1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AADH02000018 ND Methanococcoides burtonii
Methanococcoides burtonii DSM 6242
DNA section
IS Length : 1310 bp

Ends


IR Length : 25

IRL : GGGGCTGTCAAAAACTTTGGTGTTAGAAAGTTACAACTAATCAATCACAA
IRR : GGGGCTGTCAAAAACTTTGGTGTTAAACTTTATTTGATATGTTACCTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTTTATTGTATATAGGATAGCGTACACTT0

DNA sequence

GGGGCTGTCAAAAACTTTGGTGTTAGAAAGTTACAACTAATCAATCACAATGAATATATATTATGAAAGTGGATGAATGGTTATGACACCTAATATAACA
TCCACTTTCGCATCCCACATTGACTCAATACAACTTAAATTAACTGATTGTTTTTCAGGCATTACAACTTTTGAAAAAGCAATCATATCCCATTTTAGTT
CAACTGGAAAAAGGAACATTCGAAATGAGAAGGAACTTGTTTTGCATGCTGACAACCATTTTGATCTTTTACATCCTCAGTGCCCCGTATGTGGTTCCAA
TAAAATAAATAAACAAGAGTATTATACGCGTAAGTTAAAGTTAGCAGAATTTGGAAGTCAAATAATCCACGTACGAAGGTATTATTGCAAAAAATGCTCT
AAAAGATTTACAACACCTCTTGACCCAATTGTCAAAAAAGGTCATCAATATGCCAGAACATATGAACAGTATATTGAAGACAGTTATGAAACAGGATATT
GTTCATTTAGACATTTACAAAAAATATTCAGTTCACTTTATGATTGCTCCCCATCCCATCAAACCATCTATAACTGGATAAGGAAATCAAACAAAGAAGT
GACTTCAGAAGCTACAAAAGAATACTCGGGTTATTATTGCTATGATGAACAATATTTAAAATTGAATGGAAGACGATTTTATAGGCTCAGTTTGATTGAT
TCAATATTCAATAAACCAGTTGAAGAAATGATCGTTACTAATCTTGAATATGATACAGTAAAGGATTTTATTGAAAAAGCAACATCAAACAGACTAATTT
ATGCAATATCTACTGATCATCGGATAAAGTACAAATCGATAATGGATAAACTTGAGATAAAACATCAACTTTGCATATTTTATTTGTATAAATTGATTGG
AAACGATGTATTCAAAAAGTTAAAATCAAAATTTGTTAGTTACCGTGAAAAGATAAACATGTGTTTAACATTTACAGAAATAAAAGAGATATTTAGAACA
TATGATGTAAGTATCGCAATCAATAGGCTTCAAAATTTAATAGACGGTATTAAGAAAATTCCATATGCTCTTTATAGATCAATAGACAAAATCACTAGAG
ATTTTAATAGATTGACTTTGTTTATGGTAGATGGATTTGTTTCTAAAACAACAAATCCAATCGAAAATTATTACAGACAAACATTACCTAATCAGCTAAA
AAGAATATTTAAAACACCCGAATGAGTGTTGAATTATTTGGCTGTAAAAAAGAAATACTGGGAAGGTAACATATCAAATAAAGTTTAACACCAAAGTTTT
TGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1149 bp382 aa771225+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MVMTPNITSTFASHIDSIQLKLTDCFSGITTFEKAIISHFSSTGKRNIRNEKELVLHADNHFDLLHPQCPVCGSNKINKQEYYTRKLKLAEFGSQIIHVR
RYYCKKCSKRFTTPLDPIVKKGHQYARTYEQYIEDSYETGYCSFRHLQKIFSSLYDCSPSHQTIYNWIRKSNKEVTSEATKEYSGYYCYDEQYLKLNGRR
FYRLSLIDSIFNKPVEEMIVTNLEYDTVKDFIEKATSNRLIYAISTDHRIKYKSIMDKLEIKHQLCIFYLYKLIGNDVFKKLKSKFVSYREKINMCLTFT
EIKEIFRTYDVSIAINRLQNLIDGIKKIPYALYRSIDKITRDFNRLTLFMVDGFVSKTTNPIENYYRQTLPNQLKRIFKTPE

 

Blast result :
Comments
ISM1 is 52% aa similar to ISM1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2003) Direct submision GenBank.