ISNph2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 Natronomonas pharaonis DSM 2160 plasmid PL131 |
DNA section
IS Length : 1003 bp
Ends
IR Length : 21/25
IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGTCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAACTTCTCGAATAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCCGCATGATA | AACAATAA | TATCAACTTTG | 8 |
TCGCCATCGACA | TCGAGTATA | ACTCACCAGTTT | 9 |
DNA sequence
CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGTCGCTGTGAAAGCGTAGCGGGCAAGGGTGACGCGAACGCGTCACCCGAACGCAATGTTCCCAT
TTGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGAGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTGTCGTATCGCTCACTTC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCGGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
GGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCTCTCTCGAAACGCGGACGAGGAACGTATGAGGAGGACAAACCACCAGTGTTCACGCTCGTTGAT
CGCGGCACCGGTCAGCGATACGTCGTCCCGGCGAAATCCGCCGACGAAGCGACGGTGCGACTCCTTCTCGAAAACCACGAGAAGGAGTCGCTAACCGTCT
ATACCGACGGATTTCGGGCATACGATCCACTTGACGATGATGAGGACTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGC
ACACGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTTAGACCG
TTCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACGAGAAGCACTGAAACAGATTATTCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGA
GCG
TTGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGAGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTGTCGTATCGCTCACTTC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCGGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
GGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCTCTCTCGAAACGCGGACGAGGAACGTATGAGGAGGACAAACCACCAGTGTTCACGCTCGTTGAT
CGCGGCACCGGTCAGCGATACGTCGTCCCGGCGAAATCCGCCGACGAAGCGACGGTGCGACTCCTTCTCGAAAACCACGAGAAGGAGTCGCTAACCGTCT
ATACCGACGGATTTCGGGCATACGATCCACTTGACGATGATGAGGACTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGC
ACACGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTTAGACCG
TTCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACGAGAAGCACTGAAACAGATTATTCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGA
GCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MFPFELLSSEASAANLLEQVRWREGLCCPRCRSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSLLRFNTSIRQLDAEIDVSY
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDRGTGQRYVVPAKSADEATVRLLLENHEKES
LTVYTDGFRAYDPLDDDEDFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGREALKQIIREVL
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDRGTGQRYVVPAKSADEATVRLLLENHEKES
LTVYTDGFRAYDPLDDDEDFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGREALKQIIREVL
Blast result :
Comments
ISNph2 is 85% aa similar to ISH4.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. Genome Res. (2005) In press