ISNph2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
Natronomonas pharaonis DSM 2160 plasmid PL131
DNA section
IS Length : 1003 bp

Ends


IR Length : 21/25

IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGTCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAACTTCTCGAATAATC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCCGCATGATAAACAATAATATCAACTTTG8
TCGCCATCGACATCGAGTATAACTCACCAGTTT9

DNA sequence

CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGTCGCTGTGAAAGCGTAGCGGGCAAGGGTGACGCGAACGCGTCACCCGAACGCAATGTTCCCAT
TTGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGAGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTGTCGTATCGCTCACTTC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCGGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
GGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCTCTCTCGAAACGCGGACGAGGAACGTATGAGGAGGACAAACCACCAGTGTTCACGCTCGTTGAT
CGCGGCACCGGTCAGCGATACGTCGTCCCGGCGAAATCCGCCGACGAAGCGACGGTGCGACTCCTTCTCGAAAACCACGAGAAGGAGTCGCTAACCGTCT
ATACCGACGGATTTCGGGCATACGATCCACTTGACGATGATGAGGACTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGC
ACACGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTTAGACCG
TTCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACGAGAAGCACTGAAACAGATTATTCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGA
GCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPFELLSSEASAANLLEQVRWREGLCCPRCRSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSLLRFNTSIRQLDAEIDVSY
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDRGTGQRYVVPAKSADEATVRLLLENHEKES
LTVYTDGFRAYDPLDDDEDFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGREALKQIIREVL

 

Blast result :
Comments
ISNph2 is 85% aa similar to ISH4.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. Genome Res. (2005) In press