ISHma4
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006392 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 plasmid pNG400 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 21/25
IRL : CGCTCTTGCGTAGGAGATTGTTGATACTGGAGAGCAGTAGCTGCGGAGTC
IRR : CGCTCATCCGTAGCACATTGTTGATTTCACAGCGTTGCTTGAACAGCGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAGCCGATAA | TACTGTGA | AATACTGGAT | 8 |
DNA sequence
CGCTCTTGCGTAGGAGATTGTTGATACTGGAGAGCAGTAGCTGCGGAGTCGAAGAGGACAAGAGCACCGCGCCAGCGGTGCCCGACACGAATGATTCCGC
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTGATGGTGTTACCTGTCCTCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTACAGAGAGTTTCAACGGTATCTCTGTAAGAATTGCGACCGCACGTTCAACGATAAGACTGGCACAATCTTCGCTCATTCGAAGATT
GCGCTCCGACGGTGGCTGTTTTCAATTTACGCGTTTCTCCGGTTTAATACGAGTCTCCGCCAACTACAGTGCGAAATCGAGGTGACACACAAAACGATGC
ACCGGCGCATCGAGCGCTTTGCCAGAGCGCTCGATGCGCCTTCCCTCAATCTCGTCGGCCCGGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGGGAGTCGCGCTCGCGTGGCCTGTCTACGCGCGGGCGTGGTTCGTATAGCAGCGACAAGCCACCGATCTTCATCATCGCCGAC
CGTGGCACCGAACAGCGGTACGTGATTCCAGCGAAAGCCGCAGACGAATCGACGATTCGACTCCTGCTGGCCGACCGCCAGCAGGAGTCGCTCACTGTCT
ATACCGACGGCTTTCGAGCGTACGAACCGCTCGAAGATGACGACGCATTCGACCGCGAATACGTCGTCCATGGCGACGGTGAATACGCCGACGATGAGGT
GCACGTCAACACCTGCGAGAGCCACGCGTCGCAGGTGCGACGGTGGCTCTCGCCCCACCGAGGTATCTCCAAAGACAAGCTGACACAGTATCTTAGAGCG
TTTCAGCTACGCCGAGAGCTGTTTCGGAAACCCGGCCGAGATGCTCTCAAACACGCTGTTCAAGCAACGCTGTGAAATCAACAATGTGCTACGGATGAGC
G
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTGATGGTGTTACCTGTCCTCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTACAGAGAGTTTCAACGGTATCTCTGTAAGAATTGCGACCGCACGTTCAACGATAAGACTGGCACAATCTTCGCTCATTCGAAGATT
GCGCTCCGACGGTGGCTGTTTTCAATTTACGCGTTTCTCCGGTTTAATACGAGTCTCCGCCAACTACAGTGCGAAATCGAGGTGACACACAAAACGATGC
ACCGGCGCATCGAGCGCTTTGCCAGAGCGCTCGATGCGCCTTCCCTCAATCTCGTCGGCCCGGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGGGAGTCGCGCTCGCGTGGCCTGTCTACGCGCGGGCGTGGTTCGTATAGCAGCGACAAGCCACCGATCTTCATCATCGCCGAC
CGTGGCACCGAACAGCGGTACGTGATTCCAGCGAAAGCCGCAGACGAATCGACGATTCGACTCCTGCTGGCCGACCGCCAGCAGGAGTCGCTCACTGTCT
ATACCGACGGCTTTCGAGCGTACGAACCGCTCGAAGATGACGACGCATTCGACCGCGAATACGTCGTCCATGGCGACGGTGAATACGCCGACGATGAGGT
GCACGTCAACACCTGCGAGAGCCACGCGTCGCAGGTGCGACGGTGGCTCTCGCCCCACCGAGGTATCTCCAAAGACAAGCTGACACAGTATCTTAGAGCG
TTTCAGCTACGCCGAGAGCTGTTTCGGAAACCCGGCCGAGATGCTCTCAAACACGCTGTTCAAGCAACGCTGTGAAATCAACAATGTGCTACGGATGAGC
G
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MIPLDVFGSESVAADLLEQVRWRDGVTCPRCRSDRTVRNGSYREFQRYLCKNCDRTFNDKTGTIFAHSKIALRRWLFSIYAFLRFNTSLRQLQCEIEVTH
KTMHRRIERFARALDAPSLNLVGPVEIDEVYVSAGKKGRERDRESRSRGLSTRGRGSYSSDKPPIFIIADRGTEQRYVIPAKAADESTIRLLLADRQQES
LTVYTDGFRAYEPLEDDDAFDREYVVHGDGEYADDEVHVNTCESHASQVRRWLSPHRGISKDKLTQYLRAFQLRRELFRKPGRDALKHAVQATL
KTMHRRIERFARALDAPSLNLVGPVEIDEVYVSAGKKGRERDRESRSRGLSTRGRGSYSSDKPPIFIIADRGTEQRYVIPAKAADESTIRLLLADRQQES
LTVYTDGFRAYEPLEDDDAFDREYVVHGDGEYADDEVHVNTCESHASQVRRWLSPHRGISKDKLTQYLRAFQLRRELFRKPGRDALKHAVQATL
Blast result :
Comments
ISHma4 is 85% aa similar to ISH4.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234