ISHma4

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006392 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049 plasmid pNG400
DNA section
IS Length : 1001 bp

Ends


IR Length : 21/25

IRL : CGCTCTTGCGTAGGAGATTGTTGATACTGGAGAGCAGTAGCTGCGGAGTC
IRR : CGCTCATCCGTAGCACATTGTTGATTTCACAGCGTTGCTTGAACAGCGTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAGCCGATAATACTGTGAAATACTGGAT8

DNA sequence

CGCTCTTGCGTAGGAGATTGTTGATACTGGAGAGCAGTAGCTGCGGAGTCGAAGAGGACAAGAGCACCGCGCCAGCGGTGCCCGACACGAATGATTCCGC
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTGATGGTGTTACCTGTCCTCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTACAGAGAGTTTCAACGGTATCTCTGTAAGAATTGCGACCGCACGTTCAACGATAAGACTGGCACAATCTTCGCTCATTCGAAGATT
GCGCTCCGACGGTGGCTGTTTTCAATTTACGCGTTTCTCCGGTTTAATACGAGTCTCCGCCAACTACAGTGCGAAATCGAGGTGACACACAAAACGATGC
ACCGGCGCATCGAGCGCTTTGCCAGAGCGCTCGATGCGCCTTCCCTCAATCTCGTCGGCCCGGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGGGAGTCGCGCTCGCGTGGCCTGTCTACGCGCGGGCGTGGTTCGTATAGCAGCGACAAGCCACCGATCTTCATCATCGCCGAC
CGTGGCACCGAACAGCGGTACGTGATTCCAGCGAAAGCCGCAGACGAATCGACGATTCGACTCCTGCTGGCCGACCGCCAGCAGGAGTCGCTCACTGTCT
ATACCGACGGCTTTCGAGCGTACGAACCGCTCGAAGATGACGACGCATTCGACCGCGAATACGTCGTCCATGGCGACGGTGAATACGCCGACGATGAGGT
GCACGTCAACACCTGCGAGAGCCACGCGTCGCAGGTGCGACGGTGGCTCTCGCCCCACCGAGGTATCTCCAAAGACAAGCTGACACAGTATCTTAGAGCG
TTTCAGCTACGCCGAGAGCTGTTTCGGAAACCCGGCCGAGATGCTCTCAAACACGCTGTTCAAGCAACGCTGTGAAATCAACAATGTGCTACGGATGAGC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPLDVFGSESVAADLLEQVRWRDGVTCPRCRSDRTVRNGSYREFQRYLCKNCDRTFNDKTGTIFAHSKIALRRWLFSIYAFLRFNTSLRQLQCEIEVTH
KTMHRRIERFARALDAPSLNLVGPVEIDEVYVSAGKKGRERDRESRSRGLSTRGRGSYSSDKPPIFIIADRGTEQRYVIPAKAADESTIRLLLADRQQES
LTVYTDGFRAYEPLEDDDAFDREYVVHGDGEYADDEVHVNTCESHASQVRRWLSPHRGISKDKLTQYLRAFQLRRELFRKPGRDALKHAVQATL

 

Blast result :
Comments
ISHma4 is 85% aa similar to ISH4.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234