ISC1174
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002754 | ND | Sulfolobus solfataricus | Sulfolobus solfataricus P2 |
DNA section
IS Length : 1174 bp
Ends
IR Length : 49/50
IRL : GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAAATAT
IRR : GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAATTAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAAATATTAAGGTGATGAAGAAATCTCTTCAAGGATTTTTGTAGTCGTTACAACGAG
TGGACCTGAAGACTTGAGGACGTGTGGAATTGAAAAGACTTATGTGCGAGGACCTCGAGGTTCTTTAGGTAGGCATCATGAACCTCGTGGCCCTCGCACA
ACTTATACTATTCGTCCTAAGAAATTTAAACCTTAAGCCCCGAAAGCACAAGCCAGAGGAAATCGCATTAGCCATTGCAGCTTACGTGATGGGAGTACAG
ATCACGAAGCTCAATATACCGCCCTCCACGTTGTATTACTACACCAGGAAGCTCGGGGTAAAGAGGAGGAAGGACGTGAGACCGAGATGTCCTTCCTGCA
ACTCGGATCGCGTGATCAAGAACGGTTCGTCCAGAGGGAAGAGCAAGTACAAGTGCAAGGTCTGCGGGAGGACCTTTTACGGAACTGCGAGTCACAGGAT
GAGCAGGGAGCAGAGGGAGAGGATCTTGAGGGAGTACACCAACAGGATGAGCTTGAGGGGAATATCCAAGGTTGAGGGAAGGCCATTGACCACGGTCTAC
AGCTCGGTGAAGAGGGCAGCCTTGAAGGCTTACGTTGACTTGTCGATCTTGCAAGCCCAATTGAAGGCCTTCAGGTCGAAGTTCGCGGTCCTAGACGAGA
GCTGGACTTACGTCCGCGTGAGACGCGGTCCCAGACGACAGAACCTCTGGATCTGGAACGCTTTGATCGACGGAGTCCCCTTCTTTGTCACCGGTGACAG
GGACTACAACACCTTCCGTCTTCTTTGGCTGTCACTCCCCAAGTGCGAGGTCCACTACACCGACGACTACCCAATCTATCAAGTCTTGTATCACCACGTT
GTGGGCAAGAAGTACACCCACACCGTGGAGAGCTACAACTCATTCTGTAGGTCTCACTTAGCTCGGCTAGCTAGGGACACGAAGGCCGTAAACAGGAGCA
GGGCGATGATTGACTACAGCCTGGCCTTGTTGAACGTCATGTACCCGCAAGTTTTCACAGACGAGAAAACTCCCTTGAACTTAGCCTATTTGAGCGGAGT
ACAGTATATTAGAGATCATCTAATATAATTTTACTAATACTTATCGAATAAGATGACTGCATGAGAACACTCCC
TGGACCTGAAGACTTGAGGACGTGTGGAATTGAAAAGACTTATGTGCGAGGACCTCGAGGTTCTTTAGGTAGGCATCATGAACCTCGTGGCCCTCGCACA
ACTTATACTATTCGTCCTAAGAAATTTAAACCTTAAGCCCCGAAAGCACAAGCCAGAGGAAATCGCATTAGCCATTGCAGCTTACGTGATGGGAGTACAG
ATCACGAAGCTCAATATACCGCCCTCCACGTTGTATTACTACACCAGGAAGCTCGGGGTAAAGAGGAGGAAGGACGTGAGACCGAGATGTCCTTCCTGCA
ACTCGGATCGCGTGATCAAGAACGGTTCGTCCAGAGGGAAGAGCAAGTACAAGTGCAAGGTCTGCGGGAGGACCTTTTACGGAACTGCGAGTCACAGGAT
GAGCAGGGAGCAGAGGGAGAGGATCTTGAGGGAGTACACCAACAGGATGAGCTTGAGGGGAATATCCAAGGTTGAGGGAAGGCCATTGACCACGGTCTAC
AGCTCGGTGAAGAGGGCAGCCTTGAAGGCTTACGTTGACTTGTCGATCTTGCAAGCCCAATTGAAGGCCTTCAGGTCGAAGTTCGCGGTCCTAGACGAGA
GCTGGACTTACGTCCGCGTGAGACGCGGTCCCAGACGACAGAACCTCTGGATCTGGAACGCTTTGATCGACGGAGTCCCCTTCTTTGTCACCGGTGACAG
GGACTACAACACCTTCCGTCTTCTTTGGCTGTCACTCCCCAAGTGCGAGGTCCACTACACCGACGACTACCCAATCTATCAAGTCTTGTATCACCACGTT
GTGGGCAAGAAGTACACCCACACCGTGGAGAGCTACAACTCATTCTGTAGGTCTCACTTAGCTCGGCTAGCTAGGGACACGAAGGCCGTAAACAGGAGCA
GGGCGATGATTGACTACAGCCTGGCCTTGTTGAACGTCATGTACCCGCAAGTTTTCACAGACGAGAAAACTCCCTTGAACTTAGCCTATTTGAGCGGAGT
ACAGTATATTAGAGATCATCTAATATAATTTTACTAATACTTATCGAATAAGATGACTGCATGAGAACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 178 | 1128 | + | No |
Chemistry : DDE
ORF sequence :
MNLVALAQLILFVLRNLNLKPRKHKPEEIALAIAAYVMGVQITKLNIPPSTLYYYTRKLGVKRRKDVRPRCPSCNSDRVIKNGSSRGKSKYKCKVCGRTF
YGTASHRMSREQRERILREYTNRMSLRGISKVEGRPLTTVYSSVKRAALKAYVDLSILQAQLKAFRSKFAVLDESWTYVRVRRGPRRQNLWIWNALIDGV
PFFVTGDRDYNTFRLLWLSLPKCEVHYTDDYPIYQVLYHHVVGKKYTHTVESYNSFCRSHLARLARDTKAVNRSRAMIDYSLALLNVMYPQVFTDEKTPL
NLAYLSGVQYIRDHLI
YGTASHRMSREQRERILREYTNRMSLRGISKVEGRPLTTVYSSVKRAALKAYVDLSILQAQLKAFRSKFAVLDESWTYVRVRRGPRRQNLWIWNALIDGV
PFFVTGDRDYNTFRLLWLSLPKCEVHYTDDYPIYQVLYHHVVGKKYTHTVESYNSFCRSHLARLARDTKAVNRSRAMIDYSLALLNVMYPQVFTDEKTPL
NLAYLSGVQYIRDHLI
Blast result :
Comments
ISC1174 is 85% aa similar to ISC1173a. There are two complete copies in SUlfolobus solfataricus P2 genome.
References
1] She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ et al. (2001) Proc Natl Acad Sci U S A. 98(14):7835-40