ISC1174

  • Family IS1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus P2
DNA section
IS Length : 1174 bp

Ends


IR Length : 49/50

IRL : GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAAATAT
IRR : GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAATTAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGAGTGTTCTCATGCAGTCATCTTATTCGATAAGTATTAGTAAAAATATTAAGGTGATGAAGAAATCTCTTCAAGGATTTTTGTAGTCGTTACAACGAG
TGGACCTGAAGACTTGAGGACGTGTGGAATTGAAAAGACTTATGTGCGAGGACCTCGAGGTTCTTTAGGTAGGCATCATGAACCTCGTGGCCCTCGCACA
ACTTATACTATTCGTCCTAAGAAATTTAAACCTTAAGCCCCGAAAGCACAAGCCAGAGGAAATCGCATTAGCCATTGCAGCTTACGTGATGGGAGTACAG
ATCACGAAGCTCAATATACCGCCCTCCACGTTGTATTACTACACCAGGAAGCTCGGGGTAAAGAGGAGGAAGGACGTGAGACCGAGATGTCCTTCCTGCA
ACTCGGATCGCGTGATCAAGAACGGTTCGTCCAGAGGGAAGAGCAAGTACAAGTGCAAGGTCTGCGGGAGGACCTTTTACGGAACTGCGAGTCACAGGAT
GAGCAGGGAGCAGAGGGAGAGGATCTTGAGGGAGTACACCAACAGGATGAGCTTGAGGGGAATATCCAAGGTTGAGGGAAGGCCATTGACCACGGTCTAC
AGCTCGGTGAAGAGGGCAGCCTTGAAGGCTTACGTTGACTTGTCGATCTTGCAAGCCCAATTGAAGGCCTTCAGGTCGAAGTTCGCGGTCCTAGACGAGA
GCTGGACTTACGTCCGCGTGAGACGCGGTCCCAGACGACAGAACCTCTGGATCTGGAACGCTTTGATCGACGGAGTCCCCTTCTTTGTCACCGGTGACAG
GGACTACAACACCTTCCGTCTTCTTTGGCTGTCACTCCCCAAGTGCGAGGTCCACTACACCGACGACTACCCAATCTATCAAGTCTTGTATCACCACGTT
GTGGGCAAGAAGTACACCCACACCGTGGAGAGCTACAACTCATTCTGTAGGTCTCACTTAGCTCGGCTAGCTAGGGACACGAAGGCCGTAAACAGGAGCA
GGGCGATGATTGACTACAGCCTGGCCTTGTTGAACGTCATGTACCCGCAAGTTTTCACAGACGAGAAAACTCCCTTGAACTTAGCCTATTTGAGCGGAGT
ACAGTATATTAGAGATCATCTAATATAATTTTACTAATACTTATCGAATAAGATGACTGCATGAGAACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa1781128+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLVALAQLILFVLRNLNLKPRKHKPEEIALAIAAYVMGVQITKLNIPPSTLYYYTRKLGVKRRKDVRPRCPSCNSDRVIKNGSSRGKSKYKCKVCGRTF
YGTASHRMSREQRERILREYTNRMSLRGISKVEGRPLTTVYSSVKRAALKAYVDLSILQAQLKAFRSKFAVLDESWTYVRVRRGPRRQNLWIWNALIDGV
PFFVTGDRDYNTFRLLWLSLPKCEVHYTDDYPIYQVLYHHVVGKKYTHTVESYNSFCRSHLARLARDTKAVNRSRAMIDYSLALLNVMYPQVFTDEKTPL
NLAYLSGVQYIRDHLI

 

Blast result :
Comments
ISC1174 is 85% aa similar to ISC1173a. There are two complete copies in SUlfolobus solfataricus P2 genome.
References
1] She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ et al. (2001) Proc Natl Acad Sci U S A. 98(14):7835-40