ISArch3
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714829 | ND | Uncultured archaeon | Uncultured archaeon GZfos19A5 clone GZfos19A5 |
DNA section
IS Length : 1077 bp
Ends
IR Length : 20/27
IRL : TAGTACCTGACATAATTATTTAGACCATTAGCCTAAATAAATGACATGGA
IRR : TAGTTGATGTCATAATAAATTAGACAAAATGGGTTGAAATGTTGCCAACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATATAAATACAAA | TA | TTAGGCCAAAGAAATA | 2 |
DNA sequence
TAGTACCTGACATAATTATTTAGACCATTAGCCTAAATAAATGACATGGACTCATCTAACCCGCTTATCCAGCATATTTCGCTGGAAAAATTGAAACGTC
TTATTCGAGAGGAGAAAAACAAGCACATCTTTCAGCGTCTGCTATTTATTCATCAGTTGTACTTGGAAGATAGTGTTGAAAAAGCTTGCAAGAGAATGTG
CATATCAAAGCAGACAGGATATAACTGGTTAAACCAATGGAACGAGCAAGGATATGAAGGCATCAACCCAAATTTTGGCGGTGGCAGACCACCAAAGCTA
ACCAGAAAACAGAAGGAACAATTGAAAGAGAAGCTCAAAAGCAAGGGTGCATGGTTGACTCCAGAAGTGCGGGCACTCATCAGGAAAGAGTTTGATGTCG
TCTATAGCAACAGGCAGGTCTCCCGGATACTGCGGGAGTTTAAGATGCATTATGCCAAACCCTATGCGCACGATTACCGTCGACCAGAAAATGCAGAGGA
ATTATTTACAGAATCTCTGGATGTGGCTGTGGGTAAGGTCCAAGGGGAGTGCATCATTGGGTTTCTGGACCAGGCGGCACCACAGACGAGGGATAATAAG
CAAAGGTTCTGGTCTTTTGGTAAGCCGCAGATTGTCAAAAACACAAGCAGGTATAGGGCCAATACATTTGGGTTTTATCCTATAAACGGAAAAGAGGTTG
TGGAGTTTATGGAGCATTCAACTGCGGAGTATGTGTGTGCATTCCTTCGTCTAATCCGCGATAAAAATCCTAAAAAGCACATCATATTGATCCTTGATAA
CGCACGAGCCCACATAGCACAGAAAACGCGTGCATTTGCAGAATCACTACGTATAAGCTTGGTTTTCCTACCACCTTATTCTCCTGATCTAAATCCCATA
GAGTTGATTTGGAAAAGCATCAGAAGAAAAATCCCCCAGATATTTGTCAAATCCGAGTGGTCGTTTAAGGAAACCATACGCACCACATTCCACCGGCTCG
CCAAGAAGACCACATTCATGACTGGCTGGTTGGCAACATTTCAACCCATTTTGTCTAATTTATTATGACATCAACTA
TTATTCGAGAGGAGAAAAACAAGCACATCTTTCAGCGTCTGCTATTTATTCATCAGTTGTACTTGGAAGATAGTGTTGAAAAAGCTTGCAAGAGAATGTG
CATATCAAAGCAGACAGGATATAACTGGTTAAACCAATGGAACGAGCAAGGATATGAAGGCATCAACCCAAATTTTGGCGGTGGCAGACCACCAAAGCTA
ACCAGAAAACAGAAGGAACAATTGAAAGAGAAGCTCAAAAGCAAGGGTGCATGGTTGACTCCAGAAGTGCGGGCACTCATCAGGAAAGAGTTTGATGTCG
TCTATAGCAACAGGCAGGTCTCCCGGATACTGCGGGAGTTTAAGATGCATTATGCCAAACCCTATGCGCACGATTACCGTCGACCAGAAAATGCAGAGGA
ATTATTTACAGAATCTCTGGATGTGGCTGTGGGTAAGGTCCAAGGGGAGTGCATCATTGGGTTTCTGGACCAGGCGGCACCACAGACGAGGGATAATAAG
CAAAGGTTCTGGTCTTTTGGTAAGCCGCAGATTGTCAAAAACACAAGCAGGTATAGGGCCAATACATTTGGGTTTTATCCTATAAACGGAAAAGAGGTTG
TGGAGTTTATGGAGCATTCAACTGCGGAGTATGTGTGTGCATTCCTTCGTCTAATCCGCGATAAAAATCCTAAAAAGCACATCATATTGATCCTTGATAA
CGCACGAGCCCACATAGCACAGAAAACGCGTGCATTTGCAGAATCACTACGTATAAGCTTGGTTTTCCTACCACCTTATTCTCCTGATCTAAATCCCATA
GAGTTGATTTGGAAAAGCATCAGAAGAAAAATCCCCCAGATATTTGTCAAATCCGAGTGGTCGTTTAAGGAAACCATACGCACCACATTCCACCGGCTCG
CCAAGAAGACCACATTCATGACTGGCTGGTTGGCAACATTTCAACCCATTTTGTCTAATTTATTATGACATCAACTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 46 | 1068 | + | No |
Chemistry : DDE
ORF sequence :
MDSSNPLIQHISLEKLKRLIREEKNKHIFQRLLFIHQLYLEDSVEKACKRMCISKQTGYNWLNQWNEQGYEGINPNFGGGRPPKLTRKQKEQLKEKLKSK
GAWLTPEVRALIRKEFDVVYSNRQVSRILREFKMHYAKPYAHDYRRPENAEELFTESLDVAVGKVQGECIIGFLDQAAPQTRDNKQRFWSFGKPQIVKNT
SRYRANTFGFYPINGKEVVEFMEHSTAEYVCAFLRLIRDKNPKKHIILILDNARAHIAQKTRAFAESLRISLVFLPPYSPDLNPIELIWKSIRRKIPQIF
VKSEWSFKETIRTTFHRLAKKTTFMTGWLATFQPILSNLL
GAWLTPEVRALIRKEFDVVYSNRQVSRILREFKMHYAKPYAHDYRRPENAEELFTESLDVAVGKVQGECIIGFLDQAAPQTRDNKQRFWSFGKPQIVKNT
SRYRANTFGFYPINGKEVVEFMEHSTAEYVCAFLRLIRDKNPKKHIILILDNARAHIAQKTRAFAESLRISLVFLPPYSPDLNPIELIWKSIRRKIPQIF
VKSEWSFKETIRTTFHRLAKKTTFMTGWLATFQPILSNLL
Blast result :
Comments
ISArch3 is 52% aa similar to ISHma2.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462