ISArch3

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714829 ND Uncultured archaeon
Uncultured archaeon GZfos19A5 clone GZfos19A5
DNA section
IS Length : 1077 bp

Ends


IR Length : 20/27

IRL : TAGTACCTGACATAATTATTTAGACCATTAGCCTAAATAAATGACATGGA
IRR : TAGTTGATGTCATAATAAATTAGACAAAATGGGTTGAAATGTTGCCAACC

Insertion site


Left flankDirect repeatRight flankDR Length
ATATAAATACAAATATTAGGCCAAAGAAATA2

DNA sequence

TAGTACCTGACATAATTATTTAGACCATTAGCCTAAATAAATGACATGGACTCATCTAACCCGCTTATCCAGCATATTTCGCTGGAAAAATTGAAACGTC
TTATTCGAGAGGAGAAAAACAAGCACATCTTTCAGCGTCTGCTATTTATTCATCAGTTGTACTTGGAAGATAGTGTTGAAAAAGCTTGCAAGAGAATGTG
CATATCAAAGCAGACAGGATATAACTGGTTAAACCAATGGAACGAGCAAGGATATGAAGGCATCAACCCAAATTTTGGCGGTGGCAGACCACCAAAGCTA
ACCAGAAAACAGAAGGAACAATTGAAAGAGAAGCTCAAAAGCAAGGGTGCATGGTTGACTCCAGAAGTGCGGGCACTCATCAGGAAAGAGTTTGATGTCG
TCTATAGCAACAGGCAGGTCTCCCGGATACTGCGGGAGTTTAAGATGCATTATGCCAAACCCTATGCGCACGATTACCGTCGACCAGAAAATGCAGAGGA
ATTATTTACAGAATCTCTGGATGTGGCTGTGGGTAAGGTCCAAGGGGAGTGCATCATTGGGTTTCTGGACCAGGCGGCACCACAGACGAGGGATAATAAG
CAAAGGTTCTGGTCTTTTGGTAAGCCGCAGATTGTCAAAAACACAAGCAGGTATAGGGCCAATACATTTGGGTTTTATCCTATAAACGGAAAAGAGGTTG
TGGAGTTTATGGAGCATTCAACTGCGGAGTATGTGTGTGCATTCCTTCGTCTAATCCGCGATAAAAATCCTAAAAAGCACATCATATTGATCCTTGATAA
CGCACGAGCCCACATAGCACAGAAAACGCGTGCATTTGCAGAATCACTACGTATAAGCTTGGTTTTCCTACCACCTTATTCTCCTGATCTAAATCCCATA
GAGTTGATTTGGAAAAGCATCAGAAGAAAAATCCCCCAGATATTTGTCAAATCCGAGTGGTCGTTTAAGGAAACCATACGCACCACATTCCACCGGCTCG
CCAAGAAGACCACATTCATGACTGGCTGGTTGGCAACATTTCAACCCATTTTGTCTAATTTATTATGACATCAACTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa461068+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDSSNPLIQHISLEKLKRLIREEKNKHIFQRLLFIHQLYLEDSVEKACKRMCISKQTGYNWLNQWNEQGYEGINPNFGGGRPPKLTRKQKEQLKEKLKSK
GAWLTPEVRALIRKEFDVVYSNRQVSRILREFKMHYAKPYAHDYRRPENAEELFTESLDVAVGKVQGECIIGFLDQAAPQTRDNKQRFWSFGKPQIVKNT
SRYRANTFGFYPINGKEVVEFMEHSTAEYVCAFLRLIRDKNPKKHIILILDNARAHIAQKTRAFAESLRISLVFLPPYSPDLNPIELIWKSIRRKIPQIF
VKSEWSFKETIRTTFHRLAKKTTFMTGWLATFQPILSNLL

 

Blast result :
Comments
ISArch3 is 52% aa similar to ISHma2.
References
1] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F. (2004) Science 305 (5689), 1457-1462