ISH16

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006393 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049 plasmid pNG500
DNA section
IS Length : 1148 bp

Ends


IR Length : 20/25

IRL : GTGCCTAGTGGAAGTTATGAAGGTAGAGTTTGATGTATGGATATGTCTGG
IRR : GTACCTAGCGTAACTTTTGAAGATAGCCACCGAGATAGTTGTCGATCCAA

Insertion site


Left flankDirect repeatRight flankDR Length
CGCTGGGCGGCAACCTTATACTAAAGTCGGGGC2
ACGTGTTCGCCCCGACGATACTACCGGTCGCAC2

DNA sequence

GTGCCTAGTGGAAGTTATGAAGGTAGAGTTTGATGTATGGATATGTCTGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGATC
GACTCCTCGCAGAGTCTACGGATGAAAAACTCACTGAGCGGTTGATCTTCGTTAAGCGGCTCTACAAGGGTGCAACCTTGGAGGATCTGCCGACGACGTC
GGCAGATCCTCCGCGACAGGAACACGCTGGGCTCGCCGATGGAACAAGGGCGGTCTCGGACTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAGC
TCGGCGAAGAACAACAGTAACGCCTCCTAGAACTGCTCCGTGAGGGCCAACCGTGGAAGAAACAGGAGATACAGCACCTCATCAACGAGGAATTCGACGT
TGAATTTCATCCCGCTCATCTCACTACATTCCTCGAAAAGCTCGGCCTCTCCTACGCAATTCCGCGGACTAAGCGCCCATCACGGCCAGAGAATGCTGAA
GAGATACTCGACGAACGCGTCGCCGACGCGTTCGACGAGGGTTCTGATGAGTCGCACAACAAACGCGATGGAGACAACGAGGAAGGCTGGATCGTCGACG
AAGAGATTCGTACGGACGGTGGAACTGTACTTGGATTTCTCGACACATCGCATCCGCAACCGTGGGACAACTCACGGCGACTCTACACCGTCGACGACCC
TCACATCACCCGACCGCTGGTGAAATTAAACGAACCAGCGGTCGGGTTCTATGCCATCTCTGGTGAGAGTGTCGTTCAGTTTCCGAGTAATCAGGAGAAA
GAACGAATCTGCGAGTGTCTGGGGGGATCAGCGAGCAGAATCCGCTGACTCGGATTCTGCTCGTCTTAGATAGCTTCTCTTCTCACGTGTGCGAACACAC
GCGCAAGCGAGCCCATCAACTCGGAATTGACCTCGTGTTTCTGCCCGTTGGCTCACCTGATCTCAACCCGATCGAGCAGATCTGGAAGAGTTTGAAATGG
GAAGCGTCACCGTTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCGAACTCTTTGAGAAGCTCACAGCTCAGCTGAGTTTCGCGGCCTCTT
GGATCGACAACTATCTCGGTGGCTATCTTCAAAAGTTACGCTAGGTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1099 bp367 aa431141+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSGDRRKEIVRHLSEDDLDRLLAESTDEKLTERLIFVKRLYKGATLEDSADDVGRSSATGTRWARRWNKGGLGLLMPNFGGGRPPKLGEEQQ*RLLELLR
EGQPWKKQEIQHLINEEFDVEFHPAHLTTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEGSDESHNKRDGDNEEGWIVDEEIRTDGGTVLGFL
DTSHPQPWDNSRRLYTVDDPHITRPLVKLNEPAVGFYAISGESVVQFPSNQEKERICECLGGISEQNPLTRILLVLDSFSSHVCEHTRKRAHQLGIDLVF
LPVGSPDLNPIEQIWKSLKWEASPLIVESAAEYRALLTELFEKLTAQLSFAASWIDNYLGGYLQKLR

 

Blast result :
Comments
ISH16 is 95% aa similar to ISHma2. The tranposase may be inactive, this is a STOP codon at position 93. There are 2 complete and 2 partial copies in Haloarcula marismortui ATCC 43049 plasmid pNG500, one complete is disrupted ; and one partial copy in Halobacterium sp.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234