ISH16
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006393 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 plasmid pNG500 |
DNA section
IS Length : 1148 bp
Ends
IR Length : 20/25
IRL : GTGCCTAGTGGAAGTTATGAAGGTAGAGTTTGATGTATGGATATGTCTGG
IRR : GTACCTAGCGTAACTTTTGAAGATAGCCACCGAGATAGTTGTCGATCCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCTGGGCGGCAACCTTA | TA | CTAAAGTCGGGGC | 2 |
ACGTGTTCGCCCCGACGA | TA | CTACCGGTCGCAC | 2 |
DNA sequence
GTGCCTAGTGGAAGTTATGAAGGTAGAGTTTGATGTATGGATATGTCTGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGATC
GACTCCTCGCAGAGTCTACGGATGAAAAACTCACTGAGCGGTTGATCTTCGTTAAGCGGCTCTACAAGGGTGCAACCTTGGAGGATCTGCCGACGACGTC
GGCAGATCCTCCGCGACAGGAACACGCTGGGCTCGCCGATGGAACAAGGGCGGTCTCGGACTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAGC
TCGGCGAAGAACAACAGTAACGCCTCCTAGAACTGCTCCGTGAGGGCCAACCGTGGAAGAAACAGGAGATACAGCACCTCATCAACGAGGAATTCGACGT
TGAATTTCATCCCGCTCATCTCACTACATTCCTCGAAAAGCTCGGCCTCTCCTACGCAATTCCGCGGACTAAGCGCCCATCACGGCCAGAGAATGCTGAA
GAGATACTCGACGAACGCGTCGCCGACGCGTTCGACGAGGGTTCTGATGAGTCGCACAACAAACGCGATGGAGACAACGAGGAAGGCTGGATCGTCGACG
AAGAGATTCGTACGGACGGTGGAACTGTACTTGGATTTCTCGACACATCGCATCCGCAACCGTGGGACAACTCACGGCGACTCTACACCGTCGACGACCC
TCACATCACCCGACCGCTGGTGAAATTAAACGAACCAGCGGTCGGGTTCTATGCCATCTCTGGTGAGAGTGTCGTTCAGTTTCCGAGTAATCAGGAGAAA
GAACGAATCTGCGAGTGTCTGGGGGGATCAGCGAGCAGAATCCGCTGACTCGGATTCTGCTCGTCTTAGATAGCTTCTCTTCTCACGTGTGCGAACACAC
GCGCAAGCGAGCCCATCAACTCGGAATTGACCTCGTGTTTCTGCCCGTTGGCTCACCTGATCTCAACCCGATCGAGCAGATCTGGAAGAGTTTGAAATGG
GAAGCGTCACCGTTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCGAACTCTTTGAGAAGCTCACAGCTCAGCTGAGTTTCGCGGCCTCTT
GGATCGACAACTATCTCGGTGGCTATCTTCAAAAGTTACGCTAGGTAC
GACTCCTCGCAGAGTCTACGGATGAAAAACTCACTGAGCGGTTGATCTTCGTTAAGCGGCTCTACAAGGGTGCAACCTTGGAGGATCTGCCGACGACGTC
GGCAGATCCTCCGCGACAGGAACACGCTGGGCTCGCCGATGGAACAAGGGCGGTCTCGGACTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAGC
TCGGCGAAGAACAACAGTAACGCCTCCTAGAACTGCTCCGTGAGGGCCAACCGTGGAAGAAACAGGAGATACAGCACCTCATCAACGAGGAATTCGACGT
TGAATTTCATCCCGCTCATCTCACTACATTCCTCGAAAAGCTCGGCCTCTCCTACGCAATTCCGCGGACTAAGCGCCCATCACGGCCAGAGAATGCTGAA
GAGATACTCGACGAACGCGTCGCCGACGCGTTCGACGAGGGTTCTGATGAGTCGCACAACAAACGCGATGGAGACAACGAGGAAGGCTGGATCGTCGACG
AAGAGATTCGTACGGACGGTGGAACTGTACTTGGATTTCTCGACACATCGCATCCGCAACCGTGGGACAACTCACGGCGACTCTACACCGTCGACGACCC
TCACATCACCCGACCGCTGGTGAAATTAAACGAACCAGCGGTCGGGTTCTATGCCATCTCTGGTGAGAGTGTCGTTCAGTTTCCGAGTAATCAGGAGAAA
GAACGAATCTGCGAGTGTCTGGGGGGATCAGCGAGCAGAATCCGCTGACTCGGATTCTGCTCGTCTTAGATAGCTTCTCTTCTCACGTGTGCGAACACAC
GCGCAAGCGAGCCCATCAACTCGGAATTGACCTCGTGTTTCTGCCCGTTGGCTCACCTGATCTCAACCCGATCGAGCAGATCTGGAAGAGTTTGAAATGG
GAAGCGTCACCGTTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCGAACTCTTTGAGAAGCTCACAGCTCAGCTGAGTTTCGCGGCCTCTT
GGATCGACAACTATCTCGGTGGCTATCTTCAAAAGTTACGCTAGGTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1099 bp | 367 aa | 43 | 1141 | + | No |
Chemistry : DDE
ORF sequence :
MSGDRRKEIVRHLSEDDLDRLLAESTDEKLTERLIFVKRLYKGATLEDSADDVGRSSATGTRWARRWNKGGLGLLMPNFGGGRPPKLGEEQQ*RLLELLR
EGQPWKKQEIQHLINEEFDVEFHPAHLTTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEGSDESHNKRDGDNEEGWIVDEEIRTDGGTVLGFL
DTSHPQPWDNSRRLYTVDDPHITRPLVKLNEPAVGFYAISGESVVQFPSNQEKERICECLGGISEQNPLTRILLVLDSFSSHVCEHTRKRAHQLGIDLVF
LPVGSPDLNPIEQIWKSLKWEASPLIVESAAEYRALLTELFEKLTAQLSFAASWIDNYLGGYLQKLR
EGQPWKKQEIQHLINEEFDVEFHPAHLTTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEGSDESHNKRDGDNEEGWIVDEEIRTDGGTVLGFL
DTSHPQPWDNSRRLYTVDDPHITRPLVKLNEPAVGFYAISGESVVQFPSNQEKERICECLGGISEQNPLTRILLVLDSFSSHVCEHTRKRAHQLGIDLVF
LPVGSPDLNPIEQIWKSLKWEASPLIVESAAEYRALLTELFEKLTAQLSFAASWIDNYLGGYLQKLR
Blast result :
Comments
ISH16 is 95% aa similar to ISHma2. The tranposase may be inactive, this is a STOP codon at position 93. There are 2 complete and 2 partial copies in Haloarcula marismortui ATCC 43049 plasmid pNG500, one complete is disrupted ; and one partial copy in Halobacterium sp.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234