ISSis1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006424 ND Sulfolobus islandicus
Sulfolobus islandicus plasmid pARN4
DNA section
IS Length : 735 bp

Ends


IR Length : 18

IRL : GAGTGTGTCCAACAATTTTTGTTTTTTGTATAAAACATTTGTAGGGCGGT
IRR : GAGTGTGTCCAACAATTTCATTCACCTTGTTGTAAGAGGTTGTATAAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTAACCATAGAGAAAAATATGTCATCTTCTAAAATT8

DNA sequence

GAGTGTGTCCAACAATTTTTGTTTTTTGTATAAAACATTTGTAGGGCGGTGAGGTTGTATTATTGAGGAACCATGATTAGCAAGACCAAATTAAGGCACC
TCACCGCCCTAATGTTAAGTTCTGTTTTTTCAGCTTTAAACCTTTCTCCACGTTTTCACACTATTGATGAGGTTGCTAAAGCATTATCAGCCTACTACTT
GGGTCTTTCTTTGAGGAGGGTTGAAGCCTTGTTTCACGTCCCTAGAAATACTGTCCAGTATTATTGGAGGAAGTTAGCTAATTACTCTTCTCCCCCCTCG
TGTAGCGGTTATTATGCAGTTGACGAGACTAGGATTAGAGTGGTTAACGGTTTACTTTACTGGTTGTGGGTTGTGAGGGATTTGAACACGGGGAAAGTGG
TTGCAGTTAGGCTTTCAGAAACTAGGAGCGGGTTAGATGTTATACTCTTACTGGAGGGTGGTGGAATAAGGGTGGAAGAGGTTAGGGAGATACTTCACGA
CGGCGGACCTTGGTATAATATACTTTCAACACTCGGCGTTAACCCATGAACACGAGACTTTTGGCAAGAGAAACCTAGTTGAACAAATGTTCAGAAGTTT
AAAGTTAAGGCTTGCAAGTATGGACAAACACTTCCCACACAATGCCAGTAAGGCTACAATACTGAGGTGGGTTAAGGCGTTCTTCACCTTATACAACCTC
TTACAACAAGGTGAATGAAATTGTTGGACACACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
643 bp215 aa73715+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISKTKLRHLTALMLSSVFSALNLSPRFHTIDEVAKALSAYYLGLSLRRVEALFHVPRNTVQYYWRKLANYSSPPSCSGYYAVDETRIRVVNGLLYWLWV
VRDLNTGKVVAVRLSETRSGLDVILLLEGGGIRVEEVREILHDGGPWYNILSTLGVNPHEHETFGKRNLVEQMFRSLKLRLASMDKHFPHNASKATILRW
VKAFFTLYNLLQQGE

 

Blast result :
Comments
ISSis1 is 86% aa simialr to ISC735.
References
1] Greve,B., Jensen,S., Bruegger,K., Zillig,W. and Garrett,R.A. (2004) Direct submission GenBank