ISNph1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007426 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 697 bp
Ends
IR Length : 15/17
IRL : GGTCGTGTTTAGTTAAGGATGAAGAGTGAGGCGAGCCGATTTACTGAGTG
IRR : CATCGTGTTTAGTTAAGCGAATTCCACCAGACGGCGAAGGCTTGCAGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGGTAGTCCA | GATACAGCCACA | 0 |
DNA sequence
GGTCGTGTTTAGTTAAGGATGAAGAGTGAGGCGAGCCGATTTACTGAGTGGATATGGCAGAAATCGCTCGCCTCAGCGGTCGTAGCGACTGGATCGAGTT
AGACGTTGTGGAGCGAGAGCGGACACCGAGCGAGCTGATGAAGCTCGGTATTCGACTCCATCTGGCTGGATTATCACTTTCGAATACCATTCGAGAACTT
GAGAAGTTCGGTGTCAACCGGTCGCGGAAAGCCGTCCACGATTGGGTACAGAAAGCCGATCTACAGCCGGCAGACGATGCCAGTCCGGATCACATCGCGC
TTGACGAAACCGTGATCCGAATCAATGGACAGCAGTTTTGGCTGTACGCCGCTGTCGATCCTGATACAAATGAACTCCTGCACTTGAGACTATTCACAAC
AACTACAACCGCACTAACTCAGACGTTTTTGCGGGAGCTTCAACAGAAACACGACGTCGAAGACGCCGTGTTTCTCGTCGATTACACGCAACATCTAGCG
ACAGCACTCCGCCGAGCAGGGCTCCGATTTCAGACGGTCCGCCATGGAAATCGGAATGCTGTCGAACGTGTATTTAGAGATATAAAACGACGGACACCTT
CATTTAGTAATAGCTTCAGCCACGTGCAGCCGACGACCGCAGAAATATGGCTGCAAGCCTTCGCCGTCTGGTGGAATTCGCTTAACTAAACACGATG
AGACGTTGTGGAGCGAGAGCGGACACCGAGCGAGCTGATGAAGCTCGGTATTCGACTCCATCTGGCTGGATTATCACTTTCGAATACCATTCGAGAACTT
GAGAAGTTCGGTGTCAACCGGTCGCGGAAAGCCGTCCACGATTGGGTACAGAAAGCCGATCTACAGCCGGCAGACGATGCCAGTCCGGATCACATCGCGC
TTGACGAAACCGTGATCCGAATCAATGGACAGCAGTTTTGGCTGTACGCCGCTGTCGATCCTGATACAAATGAACTCCTGCACTTGAGACTATTCACAAC
AACTACAACCGCACTAACTCAGACGTTTTTGCGGGAGCTTCAACAGAAACACGACGTCGAAGACGCCGTGTTTCTCGTCGATTACACGCAACATCTAGCG
ACAGCACTCCGCCGAGCAGGGCTCCGATTTCAGACGGTCCGCCATGGAAATCGGAATGCTGTCGAACGTGTATTTAGAGATATAAAACGACGGACACCTT
CATTTAGTAATAGCTTCAGCCACGTGCAGCCGACGACCGCAGAAATATGGCTGCAAGCCTTCGCCGTCTGGTGGAATTCGCTTAACTAAACACGATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 54 | 689 | + | No |
Chemistry : DDE
ORF sequence :
MAEIARLSGRSDWIELDVVERERTPSELMKLGIRLHLAGLSLSNTIRELEKFGVNRSRKAVHDWVQKADLQPADDASPDHIALDETVIRINGQQFWLYAA
VDPDTNELLHLRLFTTTTTALTQTFLRELQQKHDVEDAVFLVDYTQHLATALRRAGLRFQTVRHGNRNAVERVFRDIKRRTPSFSNSFSHVQPTTAEIWL
QAFAVWWNSLN
VDPDTNELLHLRLFTTTTTALTQTFLRELQQKHDVEDAVFLVDYTQHLATALRRAGLRFQTVRHGNRNAVERVFRDIKRRTPSFSNSFSHVQPTTAEIWL
QAFAVWWNSLN
Blast result :
Comments
ISNph1 is 81% aa similar to ISH14. There are one complete copy in Natronomonas pharaonis DSM 2160 genome.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. (2005) Genome Res.15(10),1336-43