ISNph1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007426 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 697 bp

Ends


IR Length : 15/17

IRL : GGTCGTGTTTAGTTAAGGATGAAGAGTGAGGCGAGCCGATTTACTGAGTG
IRR : CATCGTGTTTAGTTAAGCGAATTCCACCAGACGGCGAAGGCTTGCAGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGGTAGTCCAGATACAGCCACA0

DNA sequence

GGTCGTGTTTAGTTAAGGATGAAGAGTGAGGCGAGCCGATTTACTGAGTGGATATGGCAGAAATCGCTCGCCTCAGCGGTCGTAGCGACTGGATCGAGTT
AGACGTTGTGGAGCGAGAGCGGACACCGAGCGAGCTGATGAAGCTCGGTATTCGACTCCATCTGGCTGGATTATCACTTTCGAATACCATTCGAGAACTT
GAGAAGTTCGGTGTCAACCGGTCGCGGAAAGCCGTCCACGATTGGGTACAGAAAGCCGATCTACAGCCGGCAGACGATGCCAGTCCGGATCACATCGCGC
TTGACGAAACCGTGATCCGAATCAATGGACAGCAGTTTTGGCTGTACGCCGCTGTCGATCCTGATACAAATGAACTCCTGCACTTGAGACTATTCACAAC
AACTACAACCGCACTAACTCAGACGTTTTTGCGGGAGCTTCAACAGAAACACGACGTCGAAGACGCCGTGTTTCTCGTCGATTACACGCAACATCTAGCG
ACAGCACTCCGCCGAGCAGGGCTCCGATTTCAGACGGTCCGCCATGGAAATCGGAATGCTGTCGAACGTGTATTTAGAGATATAAAACGACGGACACCTT
CATTTAGTAATAGCTTCAGCCACGTGCAGCCGACGACCGCAGAAATATGGCTGCAAGCCTTCGCCGTCTGGTGGAATTCGCTTAACTAAACACGATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa54689+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEIARLSGRSDWIELDVVERERTPSELMKLGIRLHLAGLSLSNTIRELEKFGVNRSRKAVHDWVQKADLQPADDASPDHIALDETVIRINGQQFWLYAA
VDPDTNELLHLRLFTTTTTALTQTFLRELQQKHDVEDAVFLVDYTQHLATALRRAGLRFQTVRHGNRNAVERVFRDIKRRTPSFSNSFSHVQPTTAEIWL
QAFAVWWNSLN

 

Blast result :
Comments
ISNph1 is 81% aa similar to ISH14. There are one complete copy in Natronomonas pharaonis DSM 2160 genome.
References
1] Falb,M., Pfeiffer,F., Palm,P., Rodewald,K., Hickmann,V., Tittor,J. and Oesterhelt,D. (2005) Genome Res.15(10),1336-43