ISH14

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006396 ND Haloarcula marismortui
Haloarcula marismortui
DNA section
IS Length : 696 bp

Ends


IR Length : 14/15

IRL : GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGAGAGTGATTTCAGCTGT
IRR : GGTAGTGTTTAGTTAGTAGCATTGTGCCAGCGAGCGAAACTCAGCAACCA

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCTTATCGGCAGCCGCCTCTTGAAAAGCGTTAAC8

DNA sequence

GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGAGAGTGATTTCAGCTGTCCATGGCAGAAATCACGCGCCTCAGCGGATGTAGAGACTGGATTGATTTG
GGTTTTGTGGAGCGCGAGCGGACACCCGAGCCAGCGATGGCGTTGGGTATTCAATCGCACGTTGCGGGCCTCTCGCTATCGAATACCGTTGAATTACTCG
AAGATCTGGGTGTCCAACGCAGTCGCAAAGCCGTCCACGATTGGGTGCAGAAAGCCGATCTACAGCCCGACTCTGGAAAATCTCCGAATCAGATTGCGCT
TGACGAAACAGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTACGCCGCGGCCGATCCGCAGTCGAACGAACTGCTTCACATCCGGCTATTTGCGACG
ACTACGACCACTCTCACAGAAATTTTCTTGCGCGAACTTCGGCAAAAACACGACGTCGAAACTGCCGTCTTTCTCGTCGATGGCGCTCAACATCTTCAAA
CTGCACTGCAACGAGCTGGACTCCGATTTCAGATGTCTCGCCACGGAAATCGGAACGCTGTCGAACGGATTTTTCGAGAACTAAAGCGACGAACCTCGTC
GTTTTCGAATTGCTTTAGCCATGTCGAACCGGAAACAGCCGAAAATTGGTTGCTGAGTTTCGCTCGCTGGCACAATGCTACTAACTAAACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
636 bp211 aa53688+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEITRLSGCRDWIDLGFVERERTPEPAMALGIQSHVAGLSLSNTVELLEDLGVQRSRKAVHDWVQKADLQPDSGKSPNQIALDETVIRINDQQFWLYAA
ADPQSNELLHIRLFATTTTTLTEIFLRELRQKHDVETAVFLVDGAQHLQTALQRAGLRFQMSRHGNRNAVERIFRELKRRTSSFSNCFSHVEPETAENWL
LSFARWHNATN

 

Blast result :
Comments
ISH14 is 75% aa similar to ISH15. There are 1 complete copy in Haloarcula marismortui genome.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234