ISH14
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006396 | ND | Haloarcula marismortui | Haloarcula marismortui |
DNA section
IS Length : 696 bp
Ends
IR Length : 14/15
IRL : GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGAGAGTGATTTCAGCTGT
IRR : GGTAGTGTTTAGTTAGTAGCATTGTGCCAGCGAGCGAAACTCAGCAACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCTTATCGGC | AGCCGCCT | CTTGAAAAGCGTTAAC | 8 |
DNA sequence
GGTCGTGTTTAGTTAAGCGTGAAAAGTGAGGCGAGAGTGATTTCAGCTGTCCATGGCAGAAATCACGCGCCTCAGCGGATGTAGAGACTGGATTGATTTG
GGTTTTGTGGAGCGCGAGCGGACACCCGAGCCAGCGATGGCGTTGGGTATTCAATCGCACGTTGCGGGCCTCTCGCTATCGAATACCGTTGAATTACTCG
AAGATCTGGGTGTCCAACGCAGTCGCAAAGCCGTCCACGATTGGGTGCAGAAAGCCGATCTACAGCCCGACTCTGGAAAATCTCCGAATCAGATTGCGCT
TGACGAAACAGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTACGCCGCGGCCGATCCGCAGTCGAACGAACTGCTTCACATCCGGCTATTTGCGACG
ACTACGACCACTCTCACAGAAATTTTCTTGCGCGAACTTCGGCAAAAACACGACGTCGAAACTGCCGTCTTTCTCGTCGATGGCGCTCAACATCTTCAAA
CTGCACTGCAACGAGCTGGACTCCGATTTCAGATGTCTCGCCACGGAAATCGGAACGCTGTCGAACGGATTTTTCGAGAACTAAAGCGACGAACCTCGTC
GTTTTCGAATTGCTTTAGCCATGTCGAACCGGAAACAGCCGAAAATTGGTTGCTGAGTTTCGCTCGCTGGCACAATGCTACTAACTAAACACTACC
GGTTTTGTGGAGCGCGAGCGGACACCCGAGCCAGCGATGGCGTTGGGTATTCAATCGCACGTTGCGGGCCTCTCGCTATCGAATACCGTTGAATTACTCG
AAGATCTGGGTGTCCAACGCAGTCGCAAAGCCGTCCACGATTGGGTGCAGAAAGCCGATCTACAGCCCGACTCTGGAAAATCTCCGAATCAGATTGCGCT
TGACGAAACAGTGATTCGGATCAACGATCAGCAGTTCTGGCTGTACGCCGCGGCCGATCCGCAGTCGAACGAACTGCTTCACATCCGGCTATTTGCGACG
ACTACGACCACTCTCACAGAAATTTTCTTGCGCGAACTTCGGCAAAAACACGACGTCGAAACTGCCGTCTTTCTCGTCGATGGCGCTCAACATCTTCAAA
CTGCACTGCAACGAGCTGGACTCCGATTTCAGATGTCTCGCCACGGAAATCGGAACGCTGTCGAACGGATTTTTCGAGAACTAAAGCGACGAACCTCGTC
GTTTTCGAATTGCTTTAGCCATGTCGAACCGGAAACAGCCGAAAATTGGTTGCTGAGTTTCGCTCGCTGGCACAATGCTACTAACTAAACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
636 bp | 211 aa | 53 | 688 | + | No |
Chemistry : DDE
ORF sequence :
MAEITRLSGCRDWIDLGFVERERTPEPAMALGIQSHVAGLSLSNTVELLEDLGVQRSRKAVHDWVQKADLQPDSGKSPNQIALDETVIRINDQQFWLYAA
ADPQSNELLHIRLFATTTTTLTEIFLRELRQKHDVETAVFLVDGAQHLQTALQRAGLRFQMSRHGNRNAVERIFRELKRRTSSFSNCFSHVEPETAENWL
LSFARWHNATN
ADPQSNELLHIRLFATTTTTLTEIFLRELRQKHDVETAVFLVDGAQHLQTALQRAGLRFQMSRHGNRNAVERIFRELKRRTSSFSNCFSHVEPETAENWL
LSFARWHNATN
Blast result :
Comments
ISH14 is 75% aa similar to ISH15. There are 1 complete copy in Haloarcula marismortui genome.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234