ISMst1

  • Family ISNCY
  • Group ISM1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007681 ND Methanosphaera stadtmanae
Methanosphaera stadtmanae DSM 3091
DNA section
IS Length : 1529 bp

Ends


IR Length : 24/26

IRL : GTGGCTTTCCAGTTGCTGGGTCTTGAAAAAGTTTTGATCAAAAAAAATTT
IRR : GTGGCTTTCCAGTTGTCGGGTCTTGATTTTTGAATATTTATTTTTCTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
GATTTTTTGCTTTTTTTCTTTTCAATTTTCAAAACATTTATATACTATAATT8
TTCAAGAAAAATATTTTCTTATCCTAAACCAAAAGAATTAATTAAACATTTA8
ATTTTTCATATTTTTTTAAATCATAACCAAAACATTTATATATTACTTTCAAT8

DNA sequence

GTGGCTTTCCAGTTGCTGGGTCTTGAAAAAGTTTTGATCAAAAAAAATTTGAAAATTTATTTGAAGACGTAAAAATTTATTTCTTATCTTAATTTTTATT
AAAATAAGAAAATAACGTTACACTTGAAATACACGACTCATCAAAATTCAACAAAAACTTTAATATAAAAAATAAGAATAATAAACTATTTATTATAGAA
AAGGAATAGATATTAATATGAAAACCCAAATATCTAATTCCTTAAAGGATAATATGTCCTCAATACAACTTAAACTTAACGATTTTGGTCTCAAAGATCC
AATTAAAAAAAATACTGAAGAACTCTTTAAAACTAAAAATACAAGACCTATCAACCAAGAATATGTTTATTTAAATGATAATCACTTTGAATATGATAAC
CCCACCTGTTCACATTGTCACAAAAAACACGAAAAACATAAAGTTATTAAAAAAGGATTCCGAACAAGAAAAGTCAGAACAACAAATAAAACCAAAATAA
CAATATTTTTAAGACGTTATCAATGTAAAACATGTGGAAAAAAATTCCAAACAGAATTATCATGGCTATATGATAAAAATAAAAGATACACTAAACAATT
TTTTGAATTGATAGATAAAATAATGGAATTTAGAAATATACCATTATCTCTACTACAACATATAATAAACGTAGTTCTAAATACTAATATAAATCTTCAA
ACACTTGAATTTTGGATAAAAATAAAAAATAAATTCTCTAGAAACAAAGAATACTTAAAAATAGAACTAATTAAAGATAAAAACATGATAATCAATCATA
ACATCATTGGATCAGGAATTTATAACTACGACGAACAATACATTAAAATCAACGGAAAAAAATACTATCGATTAACACTATACGACTACTCCAAAGACCA
ACCAATCGCAGAACAAATCATAAAGAAAGAATGGAATAAAAAATCACTCTCAAGCAAAACAATAGAAGAATTCATAAAAACAGCAACAAAAGAACGACCA
TTCAAAGCACTAATAACAGACGGAAAAAAACAATACAACGAAATAGCAAAAAAACTACGTGTACAACACCAAACATGCATATTCCACGCAATAAAATACA
TAAAGGACGAAACAAAAAAATACTTAAGATCAAAAACACTATCAACATTAGATAAAATGACAATTGCAAACCAAACATCACAAATATGCCAAATATATAG
GGAATTAAGTCTTTATGATACATACAAAACACTAAATGAACTAAAAGACATAGAAAACCAACTATTAAAACCAATCAAAAAAATACTAAACACCACAGTA
GAAAACAACATAAACAAAATAATAACACACCACTTATACTCTGAAATACCAAGAACAAACAACGCAGTAGAACAATACTACAGAAACTCTTTACCAAAAT
CAAAGAAAAACAAAAAAAGAACCATTGACGGCGTACTAACAACAATAGCAACTGAAATGATGAAAAAATTTAAAAATACAAAAGAAAAATAAATATTCAA
AAATCAAGACCCGACAACTGGAAAGCCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa2181492+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKTQISNSLKDNMSSIQLKLNDFGLKDPIKKNTEELFKTKNTRPINQEYVYLNDNHFEYDNPTCSHCHKKHEKHKVIKKGFRTRKVRTTNKTKITIFLRR
YQCKTCGKKFQTELSWLYDKNKRYTKQFFELIDKIMEFRNIPLSLLQHIINVVLNTNINLQTLEFWIKIKNKFSRNKEYLKIELIKDKNMIINHNIIGSG
IYNYDEQYIKINGKKYYRLTLYDYSKDQPIAEQIIKKEWNKKSLSSKTIEEFIKTATKERPFKALITDGKKQYNEIAKKLRVQHQTCIFHAIKYIKDETK
KYLRSKTLSTLDKMTIANQTSQICQIYRELSLYDTYKTLNELKDIENQLLKPIKKILNTTVENNINKIITHHLYSEIPRTNNAVEQYYRNSLPKSKKNKK
RTIDGVLTTIATEMMKKFKNTKEK

 

Blast result :
Comments
ISMst1 is 47% aa similar to ISM1. There are 3 complete and one partial copies in Methanosphaera stadtmanae DSM 3091 genome.
References
1] Fricke,W.F., Seedorf,H., Henne,A., Kruer,M., Liesegang,H., Hedderich,R., Gottschalk,G. and Thauer,R.K. (2006) J. Bacteriol. 188 (2), 642-658