ISSto9
- Family IS1
- Group
Isoform Synonym(s) ISSt796
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii 7 |
DNA section
IS Length : 796 bp
Ends
IR Length : 21
IRL : GATAGTGTCGTCATTAAGCTATTTATATTTGTATTATGAGTATTACTTAT
IRR : GATAGTGTCGTCATTAAGCTACAAATTCTGGGATTAGCCTTCTCTCCCAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTCCAGTTTT | GAGTGTGGA | CAACAATTTCATTCAT | 9 |
DNA sequence
GATAGTGTCGTCATTAAGCTATTTATATTTGTATTATGAGTATTACTTATGGGTAGGAAGCCTGTAATTAGGCATGATATAGCTTGTCCCTCTTGTGGTA
GTCATCACGTCGTTAAGTGTGGTAAGCCTCTTGGTAGGCAGAGGTTTCTGTGTAGGGATTGCGGTAAGTACTTTCTTGCAGACGCGGTTTATCACCACCA
CTCTAAGGAGGTGAGGGAGGAGGCTTTGAGGATGTATACTAATGGTATGAGTATGAGGGCTATTTCTAGGGTTCTTAACGTACCTCTGGGTACTGTTTTT
ACTTGGGTTAAGCGTTATGGTAAGAGGAAGTATGAGAAGCTAGTGGACTTGTGGAATAAGGCTAAAGAGTTGGTCAAGGGTAAGGTCGTTACTAAGGTTG
TTGATGAGATGTGGACATACTTGTACAGAAACACTAGGGCTTTCTACAAGTGGGTGTTTACTTGTCACGTGTACACTAGGCTAGGGTTATACATAATTTA
CTCTGTGGGTGATAGGGATGAGAATACTTTCAGTGAGGTTAAAATGTACTTGCCAGATGATGGTAGATGGGTGAGTGATGATTACAACGTTTACTTTTGG
TTAAAGGATCACACGGTAGTCTCACCTGTTAACCCCAACGAGTCCTTTCACTCCTCACTGAGGGATAGGCTCGTACGTTTCAAGAGGGCGACGAAGGCTG
TTAACAGGAGTATAAATATGGTGAAGTATTCTATAGCGCTGGTCTTGTGGGAGAGAAGGCTAATCCCAGAATTTGTAGCTTAATGACGACACTATC
GTCATCACGTCGTTAAGTGTGGTAAGCCTCTTGGTAGGCAGAGGTTTCTGTGTAGGGATTGCGGTAAGTACTTTCTTGCAGACGCGGTTTATCACCACCA
CTCTAAGGAGGTGAGGGAGGAGGCTTTGAGGATGTATACTAATGGTATGAGTATGAGGGCTATTTCTAGGGTTCTTAACGTACCTCTGGGTACTGTTTTT
ACTTGGGTTAAGCGTTATGGTAAGAGGAAGTATGAGAAGCTAGTGGACTTGTGGAATAAGGCTAAAGAGTTGGTCAAGGGTAAGGTCGTTACTAAGGTTG
TTGATGAGATGTGGACATACTTGTACAGAAACACTAGGGCTTTCTACAAGTGGGTGTTTACTTGTCACGTGTACACTAGGCTAGGGTTATACATAATTTA
CTCTGTGGGTGATAGGGATGAGAATACTTTCAGTGAGGTTAAAATGTACTTGCCAGATGATGGTAGATGGGTGAGTGATGATTACAACGTTTACTTTTGG
TTAAAGGATCACACGGTAGTCTCACCTGTTAACCCCAACGAGTCCTTTCACTCCTCACTGAGGGATAGGCTCGTACGTTTCAAGAGGGCGACGAAGGCTG
TTAACAGGAGTATAAATATGGTGAAGTATTCTATAGCGCTGGTCTTGTGGGAGAGAAGGCTAATCCCAGAATTTGTAGCTTAATGACGACACTATC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 735 bp | 244 aa | 49 | 783 | + | No |
Chemistry : DDE
ORF sequence :
MGRKPVIRHDIACPSCGSHHVVKCGKPLGRQRFLCRDCGKYFLADAVYHHHSKEVREEALRMYTNGMSMRAISRVLNVPLGTVFTWVKRYGKRKYEKLVD
LWNKAKELVKGKVVTKVVDEMWTYLYRNTRAFYKWVFTCHVYTRLGLYIIYSVGDRDENTFSEVKMYLPDDGRWVSDDYNVYFWLKDHTVVSPVNPNESF
HSSLRDRLVRFKRATKAVNRSINMVKYSIALVLWERRLIPEFVA
LWNKAKELVKGKVVTKVVDEMWTYLYRNTRAFYKWVFTCHVYTRLGLYIIYSVGDRDENTFSEVKMYLPDDGRWVSDDYNVYFWLKDHTVVSPVNPNESF
HSSLRDRLVRFKRATKAVNRSINMVKYSIALVLWERRLIPEFVA
Blast result :
Comments
ISSto9 is 94% aa similar to ISC796.
There are 5 complete copies and 18 partial copies (most of them are IRs) in Sulfolobus tokodaii str. 7 genome.
There are 5 complete copies and 18 partial copies (most of them are IRs) in Sulfolobus tokodaii str. 7 genome.
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M., Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S., Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H. (2001) DNA Res. 8 (4), 123-140