ISSto2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003106 | ND | Sulfolobus tokodaii | Sulfolobus tokodaii 7 |
DNA section
IS Length : 853 bp
Ends
IR Length : 33/34
IRL : CGGAGTGTGGACAACAATTTCGTTCATTTGAAATAAATTGTATTAATTGT
IRR : GGGAGTGTGGACAACAATTTCATTCATTTGAAATATTTACATTTATTATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTCAGGTTTTC | CATTA | GAACAGATATACTT | 5 |
DNA sequence
CGGAGTGTGGACAACAATTTCGTTCATTTGAAATAAATTGTATTAATTGTTTTTACTTAGATGGAGAATTCATCGTAATACTTTTTTGGTGAGCACGGGG
ATTTTTCTTGGGGGTGAACGATGAACAACCCAACTAGATGGAGGACTCCCGTGCTCACCCAAGTTATTCTAATCCTAATGGAGTATATTAATCTTGAGCC
TAGGTTTTACTCTAGTGAGGTAGTAGCTTTGGCTTTGGCTAGTTATCTCTCTGGTTTGTCTTCTTGGAGGACTTGTTTGCCTCATTCTACTTTGTTGTAT
TACTTGAGGAGGTTGAGTTGTGTTAGGTATGTGGTGCCGGTTAGTGGTTTTTATGCGGTGGATGAGACTAAAATTATGGTGGTTAAGGGGCAGTATTATT
ATGTGTGGATTGTGAGGGATGTGAAGACGGGTGCGATACCCTTCTTCATGGTGACGAGTTCGAGGAGTGGGTTGCACGTGCTGGTAGTCTTGACGAACAT
GAAGAATGTGGAAAAGGAGGCTGAGAAGGTGCTCAAAACGAGGATAGACAAGGTAGTATACATACACGATGGGGCAACAGTCTATAACGCATTCACTTGG
CTAAACGTGGAGCACAAGAGGGTAACGTTCAACGAGAGAGACTACGCAGAACAAGGGTTCAGAAGCTTAAAACATAGAATATCCTCAATGGATTTTCATT
TTCCATGGAACACTAATAGGTTCACGCTTACTAGGTGGTTATCGGTGTTCTTCCTAGCTTATAACGCGCTTTACGCTCCAGTATATTTGTTAGACAAGGG
GGTGATAATAAATGTAAATATTTCAAATGAATGAAATTGTTGTCCACACTCCC
ATTTTTCTTGGGGGTGAACGATGAACAACCCAACTAGATGGAGGACTCCCGTGCTCACCCAAGTTATTCTAATCCTAATGGAGTATATTAATCTTGAGCC
TAGGTTTTACTCTAGTGAGGTAGTAGCTTTGGCTTTGGCTAGTTATCTCTCTGGTTTGTCTTCTTGGAGGACTTGTTTGCCTCATTCTACTTTGTTGTAT
TACTTGAGGAGGTTGAGTTGTGTTAGGTATGTGGTGCCGGTTAGTGGTTTTTATGCGGTGGATGAGACTAAAATTATGGTGGTTAAGGGGCAGTATTATT
ATGTGTGGATTGTGAGGGATGTGAAGACGGGTGCGATACCCTTCTTCATGGTGACGAGTTCGAGGAGTGGGTTGCACGTGCTGGTAGTCTTGACGAACAT
GAAGAATGTGGAAAAGGAGGCTGAGAAGGTGCTCAAAACGAGGATAGACAAGGTAGTATACATACACGATGGGGCAACAGTCTATAACGCATTCACTTGG
CTAAACGTGGAGCACAAGAGGGTAACGTTCAACGAGAGAGACTACGCAGAACAAGGGTTCAGAAGCTTAAAACATAGAATATCCTCAATGGATTTTCATT
TTCCATGGAACACTAATAGGTTCACGCTTACTAGGTGGTTATCGGTGTTCTTCCTAGCTTATAACGCGCTTTACGCTCCAGTATATTTGTTAGACAAGGG
GGTGATAATAAATGTAAATATTTCAAATGAATGAAATTGTTGTCCACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
714 bp | 237 aa | 121 | 834 | + | No |
Chemistry : DDE
ORF sequence :
MNNPTRWRTPVLTQVILILMEYINLEPRFYSSEVVALALASYLSGLSSWRTCLPHSTLLYYLRRLSCVRYVVPVSGFYAVDETKIMVVKGQYYYVWIVRD
VKTGAIPFFMVTSSRSGLHVLVVLTNMKNVEKEAEKVLKTRIDKVVYIHDGATVYNAFTWLNVEHKRVTFNERDYAEQGFRSLKHRISSMDFHFPWNTNR
FTLTRWLSVFFLAYNALYAPVYLLDKGVIINVNISNE
VKTGAIPFFMVTSSRSGLHVLVVLTNMKNVEKEAEKVLKTRIDKVVYIHDGATVYNAFTWLNVEHKRVTFNERDYAEQGFRSLKHRISSMDFHFPWNTNR
FTLTRWLSVFFLAYNALYAPVYLLDKGVIINVNISNE
Blast result :
Comments
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M.,Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S.,Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H.(2001) DNA Res. 8 (4), 123-140