ISSto2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii 7
DNA section
IS Length : 853 bp

Ends


IR Length : 33/34

IRL : CGGAGTGTGGACAACAATTTCGTTCATTTGAAATAAATTGTATTAATTGT
IRR : GGGAGTGTGGACAACAATTTCATTCATTTGAAATATTTACATTTATTATC

Insertion site


Left flankDirect repeatRight flankDR Length
AATTCAGGTTTTCCATTAGAACAGATATACTT5

DNA sequence

CGGAGTGTGGACAACAATTTCGTTCATTTGAAATAAATTGTATTAATTGTTTTTACTTAGATGGAGAATTCATCGTAATACTTTTTTGGTGAGCACGGGG
ATTTTTCTTGGGGGTGAACGATGAACAACCCAACTAGATGGAGGACTCCCGTGCTCACCCAAGTTATTCTAATCCTAATGGAGTATATTAATCTTGAGCC
TAGGTTTTACTCTAGTGAGGTAGTAGCTTTGGCTTTGGCTAGTTATCTCTCTGGTTTGTCTTCTTGGAGGACTTGTTTGCCTCATTCTACTTTGTTGTAT
TACTTGAGGAGGTTGAGTTGTGTTAGGTATGTGGTGCCGGTTAGTGGTTTTTATGCGGTGGATGAGACTAAAATTATGGTGGTTAAGGGGCAGTATTATT
ATGTGTGGATTGTGAGGGATGTGAAGACGGGTGCGATACCCTTCTTCATGGTGACGAGTTCGAGGAGTGGGTTGCACGTGCTGGTAGTCTTGACGAACAT
GAAGAATGTGGAAAAGGAGGCTGAGAAGGTGCTCAAAACGAGGATAGACAAGGTAGTATACATACACGATGGGGCAACAGTCTATAACGCATTCACTTGG
CTAAACGTGGAGCACAAGAGGGTAACGTTCAACGAGAGAGACTACGCAGAACAAGGGTTCAGAAGCTTAAAACATAGAATATCCTCAATGGATTTTCATT
TTCCATGGAACACTAATAGGTTCACGCTTACTAGGTGGTTATCGGTGTTCTTCCTAGCTTATAACGCGCTTTACGCTCCAGTATATTTGTTAGACAAGGG
GGTGATAATAAATGTAAATATTTCAAATGAATGAAATTGTTGTCCACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
714 bp237 aa121834+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNNPTRWRTPVLTQVILILMEYINLEPRFYSSEVVALALASYLSGLSSWRTCLPHSTLLYYLRRLSCVRYVVPVSGFYAVDETKIMVVKGQYYYVWIVRD
VKTGAIPFFMVTSSRSGLHVLVVLTNMKNVEKEAEKVLKTRIDKVVYIHDGATVYNAFTWLNVEHKRVTFNERDYAEQGFRSLKHRISSMDFHFPWNTNR
FTLTRWLSVFFLAYNALYAPVYLLDKGVIINVNISNE

 

Blast result :
Comments
References
1] Kawarabayasi,Y., Hino,Y., Horikawa,H., Jin-no,K., Takahashi,M.,Sekine,M., Baba,S., Ankai,A., Kosugi,H., Hosoyama,A., Fukui,S.,Nagai,Y., Nishijima,K., Otsuka,R., Nakazawa,H., Takamiya,M., Kato,Y., Yoshizawa,T., Tanaka,T., Kudoh,Y., Yamazaki,J., Kushida,N., Oguchi,A., Aoki,K., Masuda,S., Yanagii,M., Nishimura,M., Yamagishi,A., Oshima,T. and Kikuchi,H.(2001) DNA Res. 8 (4), 123-140