ISC735

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY671942 ND Sulfolobus sp.
Sulfolobus sp. K00 8-41
DNA section
IS Length : 735 bp

Ends


IR Length : 15

IRL : TAGGGTGTCCAACATTTTTTGTTTTTTGTATAAAACATTAGAAGGGCGGG
IRR : GAGGGTGTCCAACATTTTCATTCACCTTGTTGAAAAAGGTTGAATAAGGT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TAGGGTGTCCAACATTTTTTGTTTTTTGTATAAAACATTAGAAGGGCGGGTGAGGTTGTATTATTGATAGGGAATGATTAGTAAGACTAAGTTAAGGCCC
CTCCCCGCCCTAGTCCTAAGTTCTGTTTTTTCAGTTTTAAACAATTTTCCACGCTTTCCCGGTAGTGAAAGTAATGCTAGAACTTTGTCAGCTTATTACT
TAGGTCTTTCTTTGAGGAGGGTTGAAGACCTGTTTCACGTCCCTAAAAATACTGTCCAGTATTATTGGAGGAAATTAGCCAATTACTTTTCTCCCCCCTC
GTGTAGCGGTCATTATGCAGTTGACGAGACCAAGATTAGAGTGGTTAACGGTTTACTTTACTGGTTGTGGGTCGTGAGGGATTTAAACACGGGGAAAGTG
ATTGCAGTTAGGCTTTCAAAAACTAGGAGCGGATTAGATGTAATACTACTATTTAAAGGCAAAAGGATTAGGCTGGAGAAGACCATTAACATTCTCCCCG
ACGGTGGGCCTTGGTATAATAAACTTTCAACACTCGGTGTTAAACACGAGCACGTGACTTTTGGCAAGAAAAACCTAGTTGAACAAGTGGTCAGAAGTTT
AAAGTTAAGACTTGCAAATATGGATAAGCACTTTCCGCCCAACGCCAGTAAGGGTTCAATAATTAGGTGGGGTAAGGCGTTTTTCACCTTATTCAACCTT
TTTCAACAAGGTGAATGAAAATGTTGGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
645 bp214 aa74718+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISKTKLRPLPALVLSSVFSVLNNFPRFPGSESNARTLSAYYLGLSLRRVEDLFHVPKNTVQYYWRKLANYFSPPSCSGHYAVDETKIRVVNGLLYWLWV
VRDLNTGKVIAVRLSKTRSGLDVILLFKGKRIRLEKTINILPDGGPWYNKLSTLGVKHEHVTFGKKNLVEQVVRSLKLRLANMDKHFPPNASKGSIIRWG
KAFFTLFNLFQQGE

 

Blast result :
Comments
ISC735 is 45% aa similar to ISPfu2.
The first nucleotide of the ISC735 is a "T" instead of a "G" as in the other IS1 members sequences.
References
1] Blount,Z.D. and Grogan,D.W. (2005) Mol. Microbiol. 55 (1), 312-325