ISC1395

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002754 ND Sulfolobus solfataricus
Sulfolobus solfataricus
DNA section
IS Length : 1392 bp

Ends


IR Length : 87/92

IRL : TAGTCTTTTTCATATTAGGCACTACATGCTCCGCCTCTAACAAATTACTC
IRR : TAGTCTTTTTCTTAATAGGCACTACATGCTCCGCCTCTAACAAAGTGACC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTANNNNNNNNNN2

DNA sequence

TAGTCTTTTTCATATTAGGCACTACATGCTCCGCCTCTAACAAATTACTCGTTCTCTAGTTTTGCGTGAATTCCCCGTAGGAGTTACAAAGGGGACTAGA
AGGGATTATCAAACTTAGTGGGGAGATGCTGGAAAATGGACGTGCTTAGGACACTACTCGTTTAACCCAGCATCTCCCCAATTAGATAAAAAGAAGTATT
AAAGATAAATGGATGTGCTTAGGACACTAAAAAGGAGGATCAGAAAGCTGATCGAAAAGAAGCCCAAGAACCTAAACGAAACCAAAGCAAGAGGAATATT
ACTATACTTGAAAGGAATGAACACTAGAAAAATAGCCAAGATACTACAAGTACACTTGAGCACAGTTTACAGATGGATCAACCAATTCGAGAAAGAAGGA
GAGAAATGCCTATTCTACAAGGAGAGAAAAGGAAGAAACAAGAAGATAGACGAAAAGGAGATAAAAGTAGAAGAACTTCAAGGTAAAACCATATGGGAAG
CAAAGGCTTATATAGAGGAGAAGTTTCACGTTAAATTAAGCCATGTAACAGCTTGGAGAATAGCTAGAAAGAGATTGAAAATCCCCTACATAAAACCATA
TAACAAGAAGAGGCCCTTTAATGCAGATAACATCTTGAGGGGGAGGTTAAAGGGTGTTATTAAGAAGGGTGTTAAGGTGTTTTTCATGGACGAGTCCGGT
ATTCATCACGATCCTTCCAGGAGATTGGGGTTGTATAATGTTTCCGTTGATTATCCCAGTAAGAAGCTTAATGTTCTCGCTTCTATTCCCTTGTTTGACG
GTGTTCCTTGTTTCATGTCCACCTATTCCAATGTTAATTTCAAGATCTTTGCTGAGTTTCTTCGCTTGTTTAGGAATTCCGGTCCTATCGTGTTGATCCT
TGATAATGCTAAGTTTCACAAGAATGCTTATGTTTTCTCCGTTGCTTCTCAGCTCGGCATTACCTTGCTTTTCTTACCTCCGTATTCTCCGGATTTGAAT
CCGATTGAGTTGGTCTGGAGGGACTTGGTTCGTGGGTTAATACTTATTATAATTTTGAATACACTCTTGATTCGATGGAGGAGGAGTTCTATTATTTGTT
TTTGACGCGTGATTATACAAGCTATTGGGTTAATAAGTTTCGTGACGTGCTCGAGAAACTGGAGGAAGAGGTTAGTATGAAACAATTTTTATTGATTCTC
CTTTATTATTTGTTCTCAAGTTCTATCAAGTTTAATTCATTAACTATTTAGACTTATTCGAGTGTTCTTCTATATTTTGTATTGGGAAATATTAATTTCT
CCTTCGCATCTCCTACGGTGGCAGAGAATCCCGATCTGCTACGGTCACTTTGTTAGAGGCGGAGCATGTAGTGCCTATTAAGAAAAAGACTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
897 bp298 aa2091105+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVLRTLKRRIRKLIEKKPKNLNETKARGILLYLKGMNTRKIAKILQVHLSTVYRWINQFEKEGEKCLFYKERKGRNKKIDEKEIKVEELQGKTIWEAKA
YIEEKFHVKLSHVTAWRIARKRLKIPYIKPYNKKRPFNADNILRGRLKGVIKKGVKVFFMDESGIHHDPSRRLGLYNVSVDYPSKKLNVLASIPLFDGVP
CFMSTYSNVNFKIFAEFLRLFRNSGPIVLILDNAKFHKNAYVFSVASQLGITLLFLPPYSPDLNPIELVWRDLVRGLILIIILNTLLIRWRRSSIICF

 

Blast result :
Comments
ISC1395 is 44% aa similar to ISC1048.
The transposase is split in two polypeptides in 3 of the 4 copies in the genome.
These transposase is probably inactive.
References
1] She,Q., Singh,R.K., Confalonieri,F., Zivanovic,Y., Allard,G.,Awayez,M.J., Chan-Weiher,C.C., Clausen,I.G., Curtis,B.A., De Moors,A., Erauso,G., Fletcher,C., Gordon,P.M., Heikamp-de Jong,I.,
Jeffries,A.C., Kozera,C.J., Medina,N., Peng,X., Thi-Ngoc,H.P.,Redder,P., Schenk,M.E., Theriault,C., Tolstrup,N., Charlebois,R.L.,Doolittle,W.F., Duguet,M., Gaasterland,T., Garrett,R.A., Ragan,M.A., Sensen,C.W. and Van der Oost,J. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (14), 7835-7840