ISBcen18
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 |
DNA section
IS Length : 1372 bp
Ends
IR Length : 22/29
IRL : GGCCTATCCGTGATTTCGTGGGCGGGGCATATCATGAGGTGTAAAGGTCA
IRR : AACCTGTCCGCATTTTTGTGGGCGAGGCGGTTGAACAGCACGTTATCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAACGCCC | CGACGGAAAG | CTTCTTCAAC | 10 |
DNA sequence
GGCCTATCCGTGATTTCGTGGGCGGGGCATATCATGAGGTGTAAAGGTCATGGATATGCCAATGAAGAAGAAAAGGCAAACTGTAGCGCGTCAGGCAGCG
GCCCGCGGGCCGCTGCCTGAACTGCCCAAGGAACTGCTGGACCAACTGGTCAAGGGGCCGATGACGCCGACCGAGGTCCAGGATTTGATGCTGGCGTTCA
ACAAAGCAGTCATCGAACGCGCAATGGGTGCCGAGATGAATCTGCATCTGGGCTACCCGTCGGGCCAGTCTAAGCCGGCCGGGCAAGCCAACGAGCGCAA
CGGCGCCAGCGGCAAGACCGTCATCACCGATCGGGGCCCGGTTCGGGTCGAAGTCCCCCGCGATCGCGACGGCAGCTTCGAACCGATCCTGATTCCAAAG
CATGAGCGCCGCTTCACCGGCTTCGACGAACGCATCATCGCGATGTACGCCCGCGGCATGAGCGTGCGCGAGATTCAGGCCTTTCTGGCTGAGAGCTACG
GCACCGAGGTATCTCCCGACTTCATCAGTTCGGTCACCGACGAGGTGATGGCCGAGGCGCTGAGCTGGCAGAGCCGCCCGCTTGAGACGATGTATCCGGT
CGTGTTCTTCGATGCACTGCGGGTCAAGATCCGCGACGACGGCGTGGTCAGCAACAAGGCTGTCTATCTGGCCTTGGGCATTCAGGCCGACGGCCAGCGC
GATGTGCTGGGCCTTTGGATCGAGCAGACCGAGGGCGCCAAGTTCTGGCTCAAGGTGTTCAACGAACTGAAGACGCGCGGCTGTCAGGACATCCTGATCG
CCGTGGTGGACGGATTGAAGGGGCTGACCGAGGCCATCAGCGCGGCCTATCCGCGGACCACCGTTCAGACCTGCATCGTGCATCTGATCCGCAACAGTCT
GGAGTACGCCAGCTACAAGGACCGTAAGGTGCTCGCCGCCGCGCTGCGCCCGATCTACGCGGCTGCCAGCGAAGAGGCGGCACGGCAGGCGCTGCAAGAC
TTCGCCGACGGGCCTTGGGGCGTGAAGTATCCAACGATCGTGCAGTCGTGGCAACGCGCGTGGGAGCACGTCGTGCCGTTCTACGTGTTTCCGCCGGAGA
TTCGACGGGTCGTTTATACGACAAACGCCATCGAGAGTCTGAACATGCAACTGCGCAAGATCATCAAGACCCGTGGTCACTTCCCGAACGACGAGGCGGC
AATCAAGCTGCTCTGGCTGGCGCTGCGCAACGTACTGGCCAAGACCGTGCGGTCCGCGTTCGACTGGAAATCAGCAATGAACCAGTTTGCTATCCTGTTC
GGCGAGCGATTTATGCAGGCGCGTGGATAACGTGCTGTTCAACCGCCTCGCCCACAAAAATGCGGACAGGTT
GCCCGCGGGCCGCTGCCTGAACTGCCCAAGGAACTGCTGGACCAACTGGTCAAGGGGCCGATGACGCCGACCGAGGTCCAGGATTTGATGCTGGCGTTCA
ACAAAGCAGTCATCGAACGCGCAATGGGTGCCGAGATGAATCTGCATCTGGGCTACCCGTCGGGCCAGTCTAAGCCGGCCGGGCAAGCCAACGAGCGCAA
CGGCGCCAGCGGCAAGACCGTCATCACCGATCGGGGCCCGGTTCGGGTCGAAGTCCCCCGCGATCGCGACGGCAGCTTCGAACCGATCCTGATTCCAAAG
CATGAGCGCCGCTTCACCGGCTTCGACGAACGCATCATCGCGATGTACGCCCGCGGCATGAGCGTGCGCGAGATTCAGGCCTTTCTGGCTGAGAGCTACG
GCACCGAGGTATCTCCCGACTTCATCAGTTCGGTCACCGACGAGGTGATGGCCGAGGCGCTGAGCTGGCAGAGCCGCCCGCTTGAGACGATGTATCCGGT
CGTGTTCTTCGATGCACTGCGGGTCAAGATCCGCGACGACGGCGTGGTCAGCAACAAGGCTGTCTATCTGGCCTTGGGCATTCAGGCCGACGGCCAGCGC
GATGTGCTGGGCCTTTGGATCGAGCAGACCGAGGGCGCCAAGTTCTGGCTCAAGGTGTTCAACGAACTGAAGACGCGCGGCTGTCAGGACATCCTGATCG
CCGTGGTGGACGGATTGAAGGGGCTGACCGAGGCCATCAGCGCGGCCTATCCGCGGACCACCGTTCAGACCTGCATCGTGCATCTGATCCGCAACAGTCT
GGAGTACGCCAGCTACAAGGACCGTAAGGTGCTCGCCGCCGCGCTGCGCCCGATCTACGCGGCTGCCAGCGAAGAGGCGGCACGGCAGGCGCTGCAAGAC
TTCGCCGACGGGCCTTGGGGCGTGAAGTATCCAACGATCGTGCAGTCGTGGCAACGCGCGTGGGAGCACGTCGTGCCGTTCTACGTGTTTCCGCCGGAGA
TTCGACGGGTCGTTTATACGACAAACGCCATCGAGAGTCTGAACATGCAACTGCGCAAGATCATCAAGACCCGTGGTCACTTCCCGAACGACGAGGCGGC
AATCAAGCTGCTCTGGCTGGCGCTGCGCAACGTACTGGCCAAGACCGTGCGGTCCGCGTTCGACTGGAAATCAGCAATGAACCAGTTTGCTATCCTGTTC
GGCGAGCGATTTATGCAGGCGCGTGGATAACGTGCTGTTCAACCGCCTCGCCCACAAAAATGCGGACAGGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 422 aa | 62 | 1327 | + | No |
Chemistry : DDE
ORF sequence :
MKKKRQTVARQAAARGPLPELPKELLDQLVKGPMTPTEVQDLMLAFNKAVIERAMGAEMNLHLGYPSGQSKPAGQANERNGASGKTVITDRGPVRVEVPR
DRDGSFEPILIPKHERRFTGFDERIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMAEALSWQSRPLETMYPVVFFDALRVKIRDDGVVSNKA
VYLALGIQADGQRDVLGLWIEQTEGAKFWLKVFNELKTRGCQDILIAVVDGLKGLTEAISAAYPRTTVQTCIVHLIRNSLEYASYKDRKVLAAALRPIYA
AASEEAARQALQDFADGPWGVKYPTIVQSWQRAWEHVVPFYVFPPEIRRVVYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKTVRSAF
DWKSAMNQFAILFGERFMQARG
DRDGSFEPILIPKHERRFTGFDERIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMAEALSWQSRPLETMYPVVFFDALRVKIRDDGVVSNKA
VYLALGIQADGQRDVLGLWIEQTEGAKFWLKVFNELKTRGCQDILIAVVDGLKGLTEAISAAYPRTTVQTCIVHLIRNSLEYASYKDRKVLAAALRPIYA
AASEEAARQALQDFADGPWGVKYPTIVQSWQRAWEHVVPFYVFPPEIRRVVYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKTVRSAF
DWKSAMNQFAILFGERFMQARG
Blast result :
Comments
1 copy within J2315. Ends defined by inverted repeats, direct repeats and insertional context (pseudogene).
ISBcen18 is 80% aa similar to ISRso7.
ISBcen18 is 80% aa similar to ISRso7.
References
[1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith, H. (2006) Direct submission.
2] Seth-Smith, H. (2006) Direct submission.