ISBcen18

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Burkholderia cenocepacia
Burkholderia cenocepacia J2315
DNA section
IS Length : 1372 bp

Ends


IR Length : 22/29

IRL : GGCCTATCCGTGATTTCGTGGGCGGGGCATATCATGAGGTGTAAAGGTCA
IRR : AACCTGTCCGCATTTTTGTGGGCGAGGCGGTTGAACAGCACGTTATCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
GATAACGCCCCGACGGAAAGCTTCTTCAAC10

DNA sequence

GGCCTATCCGTGATTTCGTGGGCGGGGCATATCATGAGGTGTAAAGGTCATGGATATGCCAATGAAGAAGAAAAGGCAAACTGTAGCGCGTCAGGCAGCG
GCCCGCGGGCCGCTGCCTGAACTGCCCAAGGAACTGCTGGACCAACTGGTCAAGGGGCCGATGACGCCGACCGAGGTCCAGGATTTGATGCTGGCGTTCA
ACAAAGCAGTCATCGAACGCGCAATGGGTGCCGAGATGAATCTGCATCTGGGCTACCCGTCGGGCCAGTCTAAGCCGGCCGGGCAAGCCAACGAGCGCAA
CGGCGCCAGCGGCAAGACCGTCATCACCGATCGGGGCCCGGTTCGGGTCGAAGTCCCCCGCGATCGCGACGGCAGCTTCGAACCGATCCTGATTCCAAAG
CATGAGCGCCGCTTCACCGGCTTCGACGAACGCATCATCGCGATGTACGCCCGCGGCATGAGCGTGCGCGAGATTCAGGCCTTTCTGGCTGAGAGCTACG
GCACCGAGGTATCTCCCGACTTCATCAGTTCGGTCACCGACGAGGTGATGGCCGAGGCGCTGAGCTGGCAGAGCCGCCCGCTTGAGACGATGTATCCGGT
CGTGTTCTTCGATGCACTGCGGGTCAAGATCCGCGACGACGGCGTGGTCAGCAACAAGGCTGTCTATCTGGCCTTGGGCATTCAGGCCGACGGCCAGCGC
GATGTGCTGGGCCTTTGGATCGAGCAGACCGAGGGCGCCAAGTTCTGGCTCAAGGTGTTCAACGAACTGAAGACGCGCGGCTGTCAGGACATCCTGATCG
CCGTGGTGGACGGATTGAAGGGGCTGACCGAGGCCATCAGCGCGGCCTATCCGCGGACCACCGTTCAGACCTGCATCGTGCATCTGATCCGCAACAGTCT
GGAGTACGCCAGCTACAAGGACCGTAAGGTGCTCGCCGCCGCGCTGCGCCCGATCTACGCGGCTGCCAGCGAAGAGGCGGCACGGCAGGCGCTGCAAGAC
TTCGCCGACGGGCCTTGGGGCGTGAAGTATCCAACGATCGTGCAGTCGTGGCAACGCGCGTGGGAGCACGTCGTGCCGTTCTACGTGTTTCCGCCGGAGA
TTCGACGGGTCGTTTATACGACAAACGCCATCGAGAGTCTGAACATGCAACTGCGCAAGATCATCAAGACCCGTGGTCACTTCCCGAACGACGAGGCGGC
AATCAAGCTGCTCTGGCTGGCGCTGCGCAACGTACTGGCCAAGACCGTGCGGTCCGCGTTCGACTGGAAATCAGCAATGAACCAGTTTGCTATCCTGTTC
GGCGAGCGATTTATGCAGGCGCGTGGATAACGTGCTGTTCAACCGCCTCGCCCACAAAAATGCGGACAGGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1266 bp422 aa621327+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKKRQTVARQAAARGPLPELPKELLDQLVKGPMTPTEVQDLMLAFNKAVIERAMGAEMNLHLGYPSGQSKPAGQANERNGASGKTVITDRGPVRVEVPR
DRDGSFEPILIPKHERRFTGFDERIIAMYARGMSVREIQAFLAESYGTEVSPDFISSVTDEVMAEALSWQSRPLETMYPVVFFDALRVKIRDDGVVSNKA
VYLALGIQADGQRDVLGLWIEQTEGAKFWLKVFNELKTRGCQDILIAVVDGLKGLTEAISAAYPRTTVQTCIVHLIRNSLEYASYKDRKVLAAALRPIYA
AASEEAARQALQDFADGPWGVKYPTIVQSWQRAWEHVVPFYVFPPEIRRVVYTTNAIESLNMQLRKIIKTRGHFPNDEAAIKLLWLALRNVLAKTVRSAF
DWKSAMNQFAILFGERFMQARG

 

Blast result :
Comments
1 copy within J2315. Ends defined by inverted repeats, direct repeats and insertional context (pseudogene).
ISBcen18 is 80% aa similar to ISRso7.
References
[1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith, H. (2006) Direct submission.