ISBcen13
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 |
DNA section
IS Length : 1957 bp
Ends
IR Length : 52-62
IRL : TGTTGGGCGCAAAGTAATAATGAGCCACTTCGCGCGAAGTAAATCTGAGC
IRR : TGTCAAACGCATTTGAAATCTGAGCCACTTCGCGCCTGATCGCGCAAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCGCCTCG | AACC | GAACAATCGG | 4 |
TAAAGTAAGC | GCTT | TGATCGCGTG | 4 |
GCCTCGGTCA | ATCT | AGTTCCCCGC | 4 |
CCATGCGACG | CCGCA | GCTTCCACGC | 5 |
CGTCTTCTGG | ACAT | CACGGTCCGT | 4 |
DNA sequence
TGTTGGGCGCAAAGTAATAATGAGCCACTTCGCGCGAAGTAAATCTGAGCCACCTTTCAGTACAGTCAGCCTTTTGCGCGCAAAGGCTGGCGATGCTCCA
GAAGGAACAGTGGATGCAAATCCATGTGCTCAAAGCCCAAGGCGTATCGGAGCGCGAGATCGCGCGGCGCCTGGGTATTTCTCGCAACACGGTGGCGCGG
TACCTGTCGGCCGAGGACGTGCCGCGCTACAAGCCGCGTGAACCGCGGCCAACCAAGCTCGGAGCGTTCGAGGCGTACATCCTCGATCGCATGAGCGCCG
CAGCACCCGAGATCATCGCTGCGCCGGCGCTGCTGCGCGAGCTGCGTGCGCGCGGCTACGAGGGCCAACTGCGAAGCCTGCAGGCTTTCATGAACGCGCA
TAAGTCCGTGCCCAAGCCAGACCCGGTCGTGAGGTTCGAGACCGAGCCTGGCCGGCAGATGCAGTGCGATTTCGTGGTCTTCCGCCGAGGCACCGACCCG
CTTTACGCCTTCACCGCCACGCTCGGGTTTAGTCGGTGGCGCTGGGCACGCTTCACCACCGATGAACGCGCCGAGACGCTGGTCGCCTGTCATCATGCGC
TGTTCGAAGCCTTGGGTGGCGTTCCTCGCGAGATCCTTTACGACAACGCCAAGACTATCGTTGTCGAGCGCGATGCATATGGCGACGGTCAACACCGCTG
GCACGCCGGCATGCTCGATCTGGCCAAGCGGTACGGCTTCCTACCCAGACTGTGCCAACCGTACCGCGCGCAAACCAAAGGCAAGGTCGAGCGATTCCAC
CGCTACCTGCGTGGCAATTTCTATGTGCCGCTGGCGAGCCGGCTCAAGCAATCCGGCTTGATGCTCGATGCCGTGACTGCGAACGTCGAGGTGAGTAAAT
GGCTGCGCGACGTGGCTAACCAGCGAGTGCATCCGGTTACAGGGCTGGCACCCGCGATTCTGTTGGAGCAACGCGAACGGGCTTGCTTGCGCGATATGCC
GGGTTACGCGGTGCCCCGATTGCCGGCTCGTGCCGTCGCTCGGCCACGCGTTGATCCAGCAATGTCGATCCAGCACCCGTTGTCCGTCTACCAGCAATTA
CTGACCGAGGTGCGCGCATGAACTTGCAGCAGGAACGCATCGACGGGCACTGCCAGAGTTTGAAGCTCGAGGGGCTCATGCACCGATACGTCGCTCTGGC
CAGCGACGCGGCGGCCAAACAATGGAGTTTCCTCGATTTCCTCGAGAACGCGCTCGCGCACGAACGAGAGACGCGGCAAGTTCGTTCGCGGCAAACACTG
GTGCGCATGGCGGGGTTCCCCGCTCTCAAGACACTGGATGACTACGACTACAGCTTCGCCGTCGGGGCCCCGCGCAAGACGATCGACGAGCTCGCCACCC
TGCGCTTCATCGAACGGGGCGAGAACGCCGTGTTGCTTGGCCCGTCAGGCGTGGGCAAGACGCATCTCGCGATAGCGATCGGATACGCTGCAACGCAGGC
CGGCATCAAGACGAAGTTCATTACGGCGGCGGATCTAATGTTGCAGCTCGAGGCCGCACGCCGACAGGAGCGATACGACGCCGTACTTCGACACAACATT
CTCGGCCCGAGGTTGCTCATCGTCGACGAGATTGGCTATCTGCCACTCTCGGGAGATCAGGCCAGCCACTTCTTCCAGATCGTCGCCAAACGCTACGAGC
GCGGTTCAATGATCCTGACCAGCAACCTGCCGTTTGCGCAGTGGGACGAGACCTTCGGTGGCAACACCACACTGACTGCAGCGATGCTCGACCGCATCCT
GCACCATGCCCACATCATCCAGATCAAAGGAGACAGCTACAGACTGAGACAGCAACGTCAAGCCGGTCACGTCTCGTCATCGAAGAAGTAACGACTGGCT
CAGTTTTACTTTGCGCGATCAGGCGCGAAGTGGCTCAGATTTCAAATGCGTTTGACA
GAAGGAACAGTGGATGCAAATCCATGTGCTCAAAGCCCAAGGCGTATCGGAGCGCGAGATCGCGCGGCGCCTGGGTATTTCTCGCAACACGGTGGCGCGG
TACCTGTCGGCCGAGGACGTGCCGCGCTACAAGCCGCGTGAACCGCGGCCAACCAAGCTCGGAGCGTTCGAGGCGTACATCCTCGATCGCATGAGCGCCG
CAGCACCCGAGATCATCGCTGCGCCGGCGCTGCTGCGCGAGCTGCGTGCGCGCGGCTACGAGGGCCAACTGCGAAGCCTGCAGGCTTTCATGAACGCGCA
TAAGTCCGTGCCCAAGCCAGACCCGGTCGTGAGGTTCGAGACCGAGCCTGGCCGGCAGATGCAGTGCGATTTCGTGGTCTTCCGCCGAGGCACCGACCCG
CTTTACGCCTTCACCGCCACGCTCGGGTTTAGTCGGTGGCGCTGGGCACGCTTCACCACCGATGAACGCGCCGAGACGCTGGTCGCCTGTCATCATGCGC
TGTTCGAAGCCTTGGGTGGCGTTCCTCGCGAGATCCTTTACGACAACGCCAAGACTATCGTTGTCGAGCGCGATGCATATGGCGACGGTCAACACCGCTG
GCACGCCGGCATGCTCGATCTGGCCAAGCGGTACGGCTTCCTACCCAGACTGTGCCAACCGTACCGCGCGCAAACCAAAGGCAAGGTCGAGCGATTCCAC
CGCTACCTGCGTGGCAATTTCTATGTGCCGCTGGCGAGCCGGCTCAAGCAATCCGGCTTGATGCTCGATGCCGTGACTGCGAACGTCGAGGTGAGTAAAT
GGCTGCGCGACGTGGCTAACCAGCGAGTGCATCCGGTTACAGGGCTGGCACCCGCGATTCTGTTGGAGCAACGCGAACGGGCTTGCTTGCGCGATATGCC
GGGTTACGCGGTGCCCCGATTGCCGGCTCGTGCCGTCGCTCGGCCACGCGTTGATCCAGCAATGTCGATCCAGCACCCGTTGTCCGTCTACCAGCAATTA
CTGACCGAGGTGCGCGCATGAACTTGCAGCAGGAACGCATCGACGGGCACTGCCAGAGTTTGAAGCTCGAGGGGCTCATGCACCGATACGTCGCTCTGGC
CAGCGACGCGGCGGCCAAACAATGGAGTTTCCTCGATTTCCTCGAGAACGCGCTCGCGCACGAACGAGAGACGCGGCAAGTTCGTTCGCGGCAAACACTG
GTGCGCATGGCGGGGTTCCCCGCTCTCAAGACACTGGATGACTACGACTACAGCTTCGCCGTCGGGGCCCCGCGCAAGACGATCGACGAGCTCGCCACCC
TGCGCTTCATCGAACGGGGCGAGAACGCCGTGTTGCTTGGCCCGTCAGGCGTGGGCAAGACGCATCTCGCGATAGCGATCGGATACGCTGCAACGCAGGC
CGGCATCAAGACGAAGTTCATTACGGCGGCGGATCTAATGTTGCAGCTCGAGGCCGCACGCCGACAGGAGCGATACGACGCCGTACTTCGACACAACATT
CTCGGCCCGAGGTTGCTCATCGTCGACGAGATTGGCTATCTGCCACTCTCGGGAGATCAGGCCAGCCACTTCTTCCAGATCGTCGCCAAACGCTACGAGC
GCGGTTCAATGATCCTGACCAGCAACCTGCCGTTTGCGCAGTGGGACGAGACCTTCGGTGGCAACACCACACTGACTGCAGCGATGCTCGACCGCATCCT
GCACCATGCCCACATCATCCAGATCAAAGGAGACAGCTACAGACTGAGACAGCAACGTCAAGCCGGTCACGTCTCGTCATCGAAGAAGTAACGACTGGCT
CAGTTTTACTTTGCGCGATCAGGCGCGAAGTGGCTCAGATTTCAAATGCGTTTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 342 aa | 93 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MLQKEQWMQIHVLKAQGVSEREIARRLGISRNTVARYLSAEDVPRYKPREPRPTKLGAFEAYILDRMSAAAPEIIAAPALLRELRARGYEGQLRSLQAFM
NAHKSVPKPDPVVRFETEPGRQMQCDFVVFRRGTDPLYAFTATLGFSRWRWARFTTDERAETLVACHHALFEALGGVPREILYDNAKTIVVERDAYGDGQ
HRWHAGMLDLAKRYGFLPRLCQPYRAQTKGKVERFHRYLRGNFYVPLASRLKQSGLMLDAVTANVEVSKWLRDVANQRVHPVTGLAPAILLEQRERACLR
DMPGYAVPRLPARAVARPRVDPAMSIQHPLSVYQQLLTEVRA
NAHKSVPKPDPVVRFETEPGRQMQCDFVVFRRGTDPLYAFTATLGFSRWRWARFTTDERAETLVACHHALFEALGGVPREILYDNAKTIVVERDAYGDGQ
HRWHAGMLDLAKRYGFLPRLCQPYRAQTKGKVERFHRYLRGNFYVPLASRLKQSGLMLDAVTANVEVSKWLRDVANQRVHPVTGLAPAILLEQRERACLR
DMPGYAVPRLPARAVARPRVDPAMSIQHPLSVYQQLLTEVRA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
771 bp | 257 aa | 1118 | 1888 | + | No |
AG : IS21 helper
ORF sequence :
MNLQQERIDGHCQSLKLEGLMHRYVALASDAAAKQWSFLDFLENALAHERETRQVRSRQTLVRMAGFPALKTLDDYDYSFAVGAPRKTIDELATLRFIER
GENAVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARRQERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMIL
TSNLPFAQWDETFGGNTTLTAAMLDRILHHAHIIQIKGDSYRLRQQRQAGHVSSSKK
GENAVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARRQERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMIL
TSNLPFAQWDETFGGNTTLTAAMLDRILHHAHIIQIKGDSYRLRQQRQAGHVSSSKK
Blast result :
Comments
5 copies within J2315.
ISBcen13 is 66% (ORF1) and 79% (ORF2) aa similar to ISGsu6.
ISBcen13 is 66% (ORF1) and 79% (ORF2) aa similar to ISGsu6.
References
1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith, H. (2006) Direct submission
2] Seth-Smith, H. (2006) Direct submission