ISBcen13

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Burkholderia cenocepacia
Burkholderia cenocepacia J2315
DNA section
IS Length : 1957 bp

Ends


IR Length : 52-62

IRL : TGTTGGGCGCAAAGTAATAATGAGCCACTTCGCGCGAAGTAAATCTGAGC
IRR : TGTCAAACGCATTTGAAATCTGAGCCACTTCGCGCCTGATCGCGCAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCGCCTCGAACCGAACAATCGG4
TAAAGTAAGCGCTTTGATCGCGTG4
GCCTCGGTCAATCTAGTTCCCCGC4
CCATGCGACGCCGCAGCTTCCACGC5
CGTCTTCTGGACATCACGGTCCGT4

DNA sequence

TGTTGGGCGCAAAGTAATAATGAGCCACTTCGCGCGAAGTAAATCTGAGCCACCTTTCAGTACAGTCAGCCTTTTGCGCGCAAAGGCTGGCGATGCTCCA
GAAGGAACAGTGGATGCAAATCCATGTGCTCAAAGCCCAAGGCGTATCGGAGCGCGAGATCGCGCGGCGCCTGGGTATTTCTCGCAACACGGTGGCGCGG
TACCTGTCGGCCGAGGACGTGCCGCGCTACAAGCCGCGTGAACCGCGGCCAACCAAGCTCGGAGCGTTCGAGGCGTACATCCTCGATCGCATGAGCGCCG
CAGCACCCGAGATCATCGCTGCGCCGGCGCTGCTGCGCGAGCTGCGTGCGCGCGGCTACGAGGGCCAACTGCGAAGCCTGCAGGCTTTCATGAACGCGCA
TAAGTCCGTGCCCAAGCCAGACCCGGTCGTGAGGTTCGAGACCGAGCCTGGCCGGCAGATGCAGTGCGATTTCGTGGTCTTCCGCCGAGGCACCGACCCG
CTTTACGCCTTCACCGCCACGCTCGGGTTTAGTCGGTGGCGCTGGGCACGCTTCACCACCGATGAACGCGCCGAGACGCTGGTCGCCTGTCATCATGCGC
TGTTCGAAGCCTTGGGTGGCGTTCCTCGCGAGATCCTTTACGACAACGCCAAGACTATCGTTGTCGAGCGCGATGCATATGGCGACGGTCAACACCGCTG
GCACGCCGGCATGCTCGATCTGGCCAAGCGGTACGGCTTCCTACCCAGACTGTGCCAACCGTACCGCGCGCAAACCAAAGGCAAGGTCGAGCGATTCCAC
CGCTACCTGCGTGGCAATTTCTATGTGCCGCTGGCGAGCCGGCTCAAGCAATCCGGCTTGATGCTCGATGCCGTGACTGCGAACGTCGAGGTGAGTAAAT
GGCTGCGCGACGTGGCTAACCAGCGAGTGCATCCGGTTACAGGGCTGGCACCCGCGATTCTGTTGGAGCAACGCGAACGGGCTTGCTTGCGCGATATGCC
GGGTTACGCGGTGCCCCGATTGCCGGCTCGTGCCGTCGCTCGGCCACGCGTTGATCCAGCAATGTCGATCCAGCACCCGTTGTCCGTCTACCAGCAATTA
CTGACCGAGGTGCGCGCATGAACTTGCAGCAGGAACGCATCGACGGGCACTGCCAGAGTTTGAAGCTCGAGGGGCTCATGCACCGATACGTCGCTCTGGC
CAGCGACGCGGCGGCCAAACAATGGAGTTTCCTCGATTTCCTCGAGAACGCGCTCGCGCACGAACGAGAGACGCGGCAAGTTCGTTCGCGGCAAACACTG
GTGCGCATGGCGGGGTTCCCCGCTCTCAAGACACTGGATGACTACGACTACAGCTTCGCCGTCGGGGCCCCGCGCAAGACGATCGACGAGCTCGCCACCC
TGCGCTTCATCGAACGGGGCGAGAACGCCGTGTTGCTTGGCCCGTCAGGCGTGGGCAAGACGCATCTCGCGATAGCGATCGGATACGCTGCAACGCAGGC
CGGCATCAAGACGAAGTTCATTACGGCGGCGGATCTAATGTTGCAGCTCGAGGCCGCACGCCGACAGGAGCGATACGACGCCGTACTTCGACACAACATT
CTCGGCCCGAGGTTGCTCATCGTCGACGAGATTGGCTATCTGCCACTCTCGGGAGATCAGGCCAGCCACTTCTTCCAGATCGTCGCCAAACGCTACGAGC
GCGGTTCAATGATCCTGACCAGCAACCTGCCGTTTGCGCAGTGGGACGAGACCTTCGGTGGCAACACCACACTGACTGCAGCGATGCTCGACCGCATCCT
GCACCATGCCCACATCATCCAGATCAAAGGAGACAGCTACAGACTGAGACAGCAACGTCAAGCCGGTCACGTCTCGTCATCGAAGAAGTAACGACTGGCT
CAGTTTTACTTTGCGCGATCAGGCGCGAAGTGGCTCAGATTTCAAATGCGTTTGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp342 aa931118+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLQKEQWMQIHVLKAQGVSEREIARRLGISRNTVARYLSAEDVPRYKPREPRPTKLGAFEAYILDRMSAAAPEIIAAPALLRELRARGYEGQLRSLQAFM
NAHKSVPKPDPVVRFETEPGRQMQCDFVVFRRGTDPLYAFTATLGFSRWRWARFTTDERAETLVACHHALFEALGGVPREILYDNAKTIVVERDAYGDGQ
HRWHAGMLDLAKRYGFLPRLCQPYRAQTKGKVERFHRYLRGNFYVPLASRLKQSGLMLDAVTANVEVSKWLRDVANQRVHPVTGLAPAILLEQRERACLR
DMPGYAVPRLPARAVARPRVDPAMSIQHPLSVYQQLLTEVRA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
771 bp257 aa11181888+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MNLQQERIDGHCQSLKLEGLMHRYVALASDAAAKQWSFLDFLENALAHERETRQVRSRQTLVRMAGFPALKTLDDYDYSFAVGAPRKTIDELATLRFIER
GENAVLLGPSGVGKTHLAIAIGYAATQAGIKTKFITAADLMLQLEAARRQERYDAVLRHNILGPRLLIVDEIGYLPLSGDQASHFFQIVAKRYERGSMIL
TSNLPFAQWDETFGGNTTLTAAMLDRILHHAHIIQIKGDSYRLRQQRQAGHVSSSKK

 

Blast result :
Comments
5 copies within J2315.
ISBcen13 is 66% (ORF1) and 79% (ORF2) aa similar to ISGsu6.
References
1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith, H. (2006) Direct submission