ISBcen9
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Burkholderia cenocepacia | Burkholderia cenocepacia J2315 |
DNA section
IS Length : 1439 bp
Ends
IR Length : 22/25
IRL : TGAACTGAACCCCAAAAGTTGGACGCCAACTTTTGGGTTTTTTTCATGGC
IRR : TGAACTGAACCCACGAAGTTGGACGGTTACCGGCTAGGCCGGATGAGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACCGGCCTG | TTG | CGGCCCGGTG | 3 |
GACCGCGCGC | TTT | AAGAGCGGCG | 3 |
GCCGCGCCCC | GAAA | GGGACGCGGC | 4 |
GCCGCCGTGC | GCAA | GCACGGCGGC | 4 |
GCCGCCGTTG | CTT | GCGCACGGCG | 3 |
GCCGTCACGG | TTTC | CCGTGACGGC | 4 |
CACCGCGCGC | GATG | CGCCGGTGGC | 4 |
CCGCCGGTGG | AAG | CCGGCGGGTT | 3 |
GCCGCCGCAT | GCAA | ATGCGGCGGC | 4 |
DNA sequence
TGAACTGAACCCCAAAAGTTGGACGCCAACTTTTGGGTTTTTTTCATGGCGAGATATACCGAGCAGTTCAAGCTATCGGTAGTGAAGCGGTGCATCGGGG
GGGAAGCCATACGCGCGGTGGCGCGAACGCATGGCTTGAGTCACTCGACGGTTTCCCAGTGGTACGCCACATACCAGGCTCATGGTAAGGACGGCGTGCG
TAGGAAGTACAACTCATACGATGTGGCGTTCAGGCTCAAAGTTGTTCAGCACATGCGCGAGCATGGCGTGTCGAGCAAGGAAGCGGCGGCGCGGTTCAAT
ATTCGCAATCCGAGCGCGGTGCTCGAATGGGCTCGCCGCTATGATGATGGTGGTTTGACTGCCCTCGCGCCGAGGCCCAAAGGCCGCCGCCCAACCGCAA
TGCCAAAAACACCGCCTGCTCAGCCTCTGAACCCTACCGATGGCACGGATACCCGTACCCGCGAGGACCTGCTTCAGGAACTGAACTACCTGCGCATGGA
GAACGCGTATCTAAAAAAGCTGAGGGCCTTGGTTCAGGCGCAGGCTGTACCGCGCAAAAAGCGCAAATAGTGCTTGAGCTAAGGCAACAATTCCCGCTGG
CTGGCTTGCTCCGGGTGGCCGGACTGGCTCGCAGCACGTTTTATTACCAGTGCAAGGCGCTGGCCGCTCCCGATCGACATGCGAGTGTGAAAGCGAAAAT
TCGAGCACTGTTCGAGCAGCACAAGGGGCGCTATGGCTATCGACGCATCACGCTGGCGCTGCGCCGTCTGGGGCAGATGATTAACCACAAGACGGTTGCA
CGCCTGATGCGCAAGATGCAGTTGAAGTCCTGCGTGCGGGTCAAGAAGTACCGTGCGTATAGGGGCAACACGTGCAAGACGGCCCCGCATCTGCTCCAGC
GCCAGTTCCATGCCGCCCGTCCGAACGAGAAGTGGGTTACCGACATCACCGAGTTCAGCGTAGGTGGCCAAAAGCTGTATCTGTCACCAGTGCTGGATCT
GTACAACGGGGAGATCATCGCGTACCAGACGCATACTCGGCCAGCCTTCCAGATGGTTACTGACATGTTGCGCAAGGCTTTGCGTCGCCTGCAACCCGAC
GAAAGACCCATGTTGCACTCTGATCAAGGCTGGCATTATCAAATGCCCGGCTGGCGGCTCATGCTCGAGCAACGCTCGTTGGCGCAAAGCATGTCGCGTA
AAGGCAATTGCTTGGACAACGCTGCCATGGAAAGCTTCTTCGGCACGCTGAAATCCGAGTTCTTCTACTTGAACCACTTCAGCAGCATTGAACAGCTACG
CATCGGCTTGAAGCGCTACATCCGGTACTACAATCACGAGCGCATCAAGCTCAAACTGAAAGGGCTGAGTCCTGTGCAATACAGGACTCAGCCTCATCCG
GCCTAGCCGGTAACCGTCCAACTTCGTGGGTTCAGTTCA
GGGAAGCCATACGCGCGGTGGCGCGAACGCATGGCTTGAGTCACTCGACGGTTTCCCAGTGGTACGCCACATACCAGGCTCATGGTAAGGACGGCGTGCG
TAGGAAGTACAACTCATACGATGTGGCGTTCAGGCTCAAAGTTGTTCAGCACATGCGCGAGCATGGCGTGTCGAGCAAGGAAGCGGCGGCGCGGTTCAAT
ATTCGCAATCCGAGCGCGGTGCTCGAATGGGCTCGCCGCTATGATGATGGTGGTTTGACTGCCCTCGCGCCGAGGCCCAAAGGCCGCCGCCCAACCGCAA
TGCCAAAAACACCGCCTGCTCAGCCTCTGAACCCTACCGATGGCACGGATACCCGTACCCGCGAGGACCTGCTTCAGGAACTGAACTACCTGCGCATGGA
GAACGCGTATCTAAAAAAGCTGAGGGCCTTGGTTCAGGCGCAGGCTGTACCGCGCAAAAAGCGCAAATAGTGCTTGAGCTAAGGCAACAATTCCCGCTGG
CTGGCTTGCTCCGGGTGGCCGGACTGGCTCGCAGCACGTTTTATTACCAGTGCAAGGCGCTGGCCGCTCCCGATCGACATGCGAGTGTGAAAGCGAAAAT
TCGAGCACTGTTCGAGCAGCACAAGGGGCGCTATGGCTATCGACGCATCACGCTGGCGCTGCGCCGTCTGGGGCAGATGATTAACCACAAGACGGTTGCA
CGCCTGATGCGCAAGATGCAGTTGAAGTCCTGCGTGCGGGTCAAGAAGTACCGTGCGTATAGGGGCAACACGTGCAAGACGGCCCCGCATCTGCTCCAGC
GCCAGTTCCATGCCGCCCGTCCGAACGAGAAGTGGGTTACCGACATCACCGAGTTCAGCGTAGGTGGCCAAAAGCTGTATCTGTCACCAGTGCTGGATCT
GTACAACGGGGAGATCATCGCGTACCAGACGCATACTCGGCCAGCCTTCCAGATGGTTACTGACATGTTGCGCAAGGCTTTGCGTCGCCTGCAACCCGAC
GAAAGACCCATGTTGCACTCTGATCAAGGCTGGCATTATCAAATGCCCGGCTGGCGGCTCATGCTCGAGCAACGCTCGTTGGCGCAAAGCATGTCGCGTA
AAGGCAATTGCTTGGACAACGCTGCCATGGAAAGCTTCTTCGGCACGCTGAAATCCGAGTTCTTCTACTTGAACCACTTCAGCAGCATTGAACAGCTACG
CATCGGCTTGAAGCGCTACATCCGGTACTACAATCACGAGCGCATCAAGCTCAAACTGAAAGGGCTGAGTCCTGTGCAATACAGGACTCAGCCTCATCCG
GCCTAGCCGGTAACCGTCCAACTTCGTGGGTTCAGTTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
522 bp | 174 aa | 46 | 567 | + | No |
Description : First part of the transposase
ORF sequence :
MARYTEQFKLSVVKRCIGGEAIRAVARTHGLSHSTVSQWYATYQAHGKDGVRRKYNSYDVAFRLKVVQHMREHGVSSKEAAARFNIRNPSAVLEWARRYD
DGGLTALAPRPKGRRPTAMPKTPPAQPLNPTDGTDTRTREDLLQELNYLRMENAYLKKLRALVQAQAVPRKKRK
DGGLTALAPRPKGRRPTAMPKTPPAQPLNPTDGTDTRTREDLLQELNYLRMENAYLKKLRALVQAQAVPRKKRK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1056 bp | 352 aa | 348 | 1403 | + | No |
Description : Second part of the transposase
ORF sequence :
WWFDCPRAEAQRPPPNRNAKNTACSASEPYRWHGYPYPRGPASGTELPAHGERVSKKAEGLGSGAGCTAQKAQIVLELRQQFPLAGLLRVAGLARSTFYY
QCKALAAPDRHASVKAKIRALFEQHKGRYGYRRITLALRRLGQMINHKTVARLMRKMQLKSCVRVKKYRAYRGNTCKTAPHLLQRQFHAARPNEKWVTDI
TEFSVGGQKLYLSPVLDLYNGEIIAYQTHTRPAFQMVTDMLRKALRRLQPDERPMLHSDQGWHYQMPGWRLMLEQRSLAQSMSRKGNCLDNAAMESFFGT
LKSEFFYLNHFSSIEQLRIGLKRYIRYYNHERIKLKLKGLSPVQYRTQPHPA
QCKALAAPDRHASVKAKIRALFEQHKGRYGYRRITLALRRLGQMINHKTVARLMRKMQLKSCVRVKKYRAYRGNTCKTAPHLLQRQFHAARPNEKWVTDI
TEFSVGGQKLYLSPVLDLYNGEIIAYQTHTRPAFQMVTDMLRKALRRLQPDERPMLHSDQGWHYQMPGWRLMLEQRSLAQSMSRKGNCLDNAAMESFFGT
LKSEFFYLNHFSSIEQLRIGLKRYIRYYNHERIKLKLKGLSPVQYRTQPHPA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1348 bp | 453 aa | 56 | 1403 | + | Yes |
Chemistry : DDE
ORF sequence :
MARYTEQFKLSVVKRCIGGEAIRAVARTHGLSHSTVSQWYATYQAHGKDGVRRKYNSYDVAFRLKVVQHMREHGVSSKEAAARFNIRNPSAVLEWARRYD
DGGLTALAPRPKGRRPTAMPKTPPAQPLNPTDGTDTRTREDLLQELNYLRMENAYLKKAEGLGSGAGCTAQKAQIVLELRQQFPLAGLLRVAGLARSTFY
YQCKALAAPDRHASVKAKIRALFEQHKGRYGYRRITLALRRLGQMINHKTVARLMRKMQLKSCVRVKKYRAYRGNTCKTAPHLLQRQFHAARPNEKWVTD
ITEFSVGGQKLYLSPVLDLYNGEIIAYQTHTRPAFQMVTDMLRKALRRLQPDERPMLHSDQGWHYQMPGWRLMLEQRSLAQSMSRKGNCLDNAAMESFFG
TLKSEFFYLNHFSSIEQLRIGLKRYIRYYNHERIKLKLKGLSPVQYRTQPHPA
DGGLTALAPRPKGRRPTAMPKTPPAQPLNPTDGTDTRTREDLLQELNYLRMENAYLKKAEGLGSGAGCTAQKAQIVLELRQQFPLAGLLRVAGLARSTFY
YQCKALAAPDRHASVKAKIRALFEQHKGRYGYRRITLALRRLGQMINHKTVARLMRKMQLKSCVRVKKYRAYRGNTCKTAPHLLQRQFHAARPNEKWVTD
ITEFSVGGQKLYLSPVLDLYNGEIIAYQTHTRPAFQMVTDMLRKALRRLQPDERPMLHSDQGWHYQMPGWRLMLEQRSLAQSMSRKGNCLDNAAMESFFG
TLKSEFFYLNHFSSIEQLRIGLKRYIRYYNHERIKLKLKGLSPVQYRTQPHPA
Blast result :
Comments
9 copies within J2315.
ISBcen9 is 61% (ORF1) aa similar to IS1221A and 79% (ORF2) aa similar to ISRso11.
ISBcen9 is 61% (ORF1) aa similar to IS1221A and 79% (ORF2) aa similar to ISRso11.
References
1] The Wellcome Trust Sanger Institute. http://www.sanger.ac.uk
2] Seth-Smith, H. (2006) Direct submission
2] Seth-Smith, H. (2006) Direct submission